YRC Public Data Repository - Protein Structure Prediction

Protein:	PLGG1_ARATH
Organism:	Arabidopsis thaliana
Length:	512 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PLGG1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|21593232 - gi\|21593232\|gb\|AAM65181.1\| unknown [Arabidopsis thaliana]	468.0	[0..1]	[512..1]
gi\|31433687, gi\|... - gi\|37537164\|ref\|NP_922885.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|31433687\|g...	305.0	[0..87]	[512..27]
gi\|23009168 - gi\|23009168\|ref\|ZP_00050318.1\| COG1346: Putative effector of murein hydrolase [Magnetospirillum magn...	276.0	[0..99]	[505..1]
gi\|49648509, gi\|... - gi\|50550337\|ref\|XP_502641.1\| YALI0D10021p [Yarrowia lipolytica], gi\|49648509\|emb\|CAG80829.1\| unnamed... gi\|49648509 - gi\|49648509\|emb\|CAG80829.1\| YALI0D10021p [Yarrowia lipolytica]	244.0	[0..80]	[512..26]
gi\|67102599, gi\|... - gi\|67663830\|ref\|ZP_00461109.1\| LrgB-like protein [Burkholderia cenocepacia HI2424], gi\|67102599\|gb\|E...	241.0	[0..260]	[502..175]
gi\|83747251, gi\|... - gi\|83747251\|ref\|ZP_00944293.1\| Murein hydrolase export regulator [Ralstonia solanacearum UW551], gi\|... gi\|207721663, gi... - gi\|207721663\|ref\|YP_002252102.1\| effector of murein hydrolase protein [Ralstonia solanacearum MolK2]... gi\|207744240, gi... - gi\|207744240\|ref\|YP_002260632.1\| effector of murein hydrolase protein [Ralstonia solanacearum IPO160...	227.0	[0..259]	[502..9]
gi\|48844174, gi\|... - gi\|78222419\|ref\|YP_384166.1\| LrgB-like protein [Geobacter metallireducens GS-15], gi\|78193674\|gb\|ABB...	226.0	[0..261]	[504..8]
gi\|67548488, gi\|... - gi\|67548488\|ref\|ZP_00426376.1\| LrgB-like protein [Burkholderia vietnamiensis G4], gi\|67530214\|gb\|EAM...	225.0	[0..260]	[502..9]
gi\|67154131 - gi\|67154131\|ref\|ZP_00415876.1\| LrgB-like protein [Azotobacter vinelandii AvOP] gi\|67154131, gi\|... - gi\|67154131\|ref\|ZP_00415876.1\| LrgB-like protein [Azotobacter vinelandii AvOP], gi\|67088264\|gb\|EAM07...	224.0	[0..256]	[504..212]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLLATPIF SPLASSPARN RLSCSKIRFG SKNGKILNSD GAQKLNLSKF RKPDGQRFLQ  60
   61 MGSSKEMNFE RKLSVQAMDG AGT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.673	d.120.1	Cytochrome b5
View	Download	0.454	d.15.2	CAD & PB1 domains
View	Download	0.454	d.15.2	CAD & PB1 domains
View	Download	0.412	d.120.1	Cytochrome b5
View	Download	0.412	d.120.1	Cytochrome b5
View	Download	0.385	d.120.1	Cytochrome b5
View	Download	0.373	d.15.2	CAD & PB1 domains
View	Download	0.350	a.218.1	Description not found.
View	Download	0.261	g.41.10	Zn-finger domain of Sec23/24

Predicted Domain #2

Region A:
Residues: [84-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNTSTISRNV IAISHLLVSL GIILAADYFL KQAFVAASIK FPSALFGMFC IFSVLMIFDS  60
   61 VVPAAANGLM NFFEPAFLFI QRWLPLFYVP SLVVLPLSVR DIPAASGVKI CYIVAGGWLA 120
  121 SLCVAGYTAI AVRKMVKTE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [223-330]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEAEPMAKP SPFSTLELWS WSGIFVVSFV GALFYPNSLG TSARTSLPFL LSSTVLGYIV  60
   61 GSGLPSSIKK VFHPIICCAL SAVLAALAFG YASGSGLDPV LGNYLTKV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [331-512]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASDPGAGDIL MGFLGSVILS FAFSMFKQRK LVKRHAAEIF TSVIVSTVFS LYSTALVGRL  60
   61 VGLEPSLTVS ILPRCITVAL ALSIVSLFEG TNSSLTAAVV VVTGLIGANF VQVVLDKLRL 120
  121 RDPIARGIAT ASSAHGLGTA ALSAKEPEAL PFCAIAYALT GIFGSLLCSV PAVRQSLLAV 180
  181 VG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits