YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|110737014, gi...
Organism: Arabidopsis thaliana
Length: 261 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110737014, gi....

Description E-value Query
Range
Subject
Range
gi|31432894, gi|... - gi|37535762|ref|NP_922183.1| putative ribosomal protein [Oryza sativa (japonica cultivar-group)], gi...
190.0 [0..54] [247..41]

Back

Predicted Domain #1
Region A:
Residues: [1-153]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIARFATRS LNNVTFLRPF RPIVSRSLAT NANEDPNQNR SSFDSSDNLD SLFGDYTGND  60
   61 EKSNDFFQHL SKAEKDKRDF NGYNRSGGSR YSGGGSMSKD ETFDPSSDGV DGKLKEAALA 120
  121 YNMDEGDGFK EYSFRPDFNN SWGMNNFPRM QKQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.217 a.72.1 Functional domain of the splicing factor Prp18

Predicted Domain #2
Region A:
Residues: [154-261]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNPRQNNSK SEVTTEEVLK NADFRNVRFL ANFITEAGII IKRKQTGISA KAQRKIAREI  60
   61 KTARAFGLMP FTTMGTKAFQ FGKTMENRDQ DFEYEVLDDD DEFDEGNA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.0
Match: 2uu9R
Description: No description for 2uu9R was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle