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View Structure Prediction Details

Protein: RBL3_ARATH
Organism: Arabidopsis thaliana
Length: 346 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBL3_ARATH.

Description E-value Query
Range
Subject
Range
RBL1_ARATH - RHOMBOID-like protein 1 OS=Arabidopsis thaliana GN=RBL1 PE=2 SV=1
256.0 [0..52] [343..53]

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Predicted Domain #1
Region A:
Residues: [1-77]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVGDDDLEN RMSAKDRGIG SRGGDRNRIG PPPLPVALSS STEFGDNALS SRWTSWLVPM  60
   61 FVVANVAVFV VAMFVNN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [78-282]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CPNHFESHRL RGHCVAKFLG RLSFEPLRTN PLFGPSSHTL EKLGALEWSK VVEKKEGWRL  60
   61 LTCIWLHAGV IHLGANMLSL VFIGIRLEQQ FGFVRIGVIY LLSGIGGSVL SSLFIRNSIS 120
  121 VGASGALFGL LGSMLSELFT NWTIYSNKIA ALLTLLFVIL INLAIGILPH VDNFAHVGGF 180
  181 VTGFLLGFIL LARPQFKWLA REHMP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.30103
Match: 2nr9A
Description: No description for 2nr9A was found.

Predicted functions:

Term Confidence Notes
catalytic activity 0.015349122465922 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [283-346]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QGTPLRYKYK TYQYLLWLLS LVLLIAGFVV ALLMLFRGEN GNDHCRWCHY LRCVPTSSWR  60
   61 CDDV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle