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View Structure Prediction Details

Protein: gi|4220455, gi|2...
Organism: Arabidopsis thaliana
Length: 573 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4220455, gi|2....

Description E-value Query
Range
Subject
Range
gi|68388302 - gi|68388302|ref|XP_696268.1| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]
278.0 [0..6] [568..2342]

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Predicted Domain #1
Region A:
Residues: [1-265]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIITTHKRDI NLLVLQLGAA LAVSFAGFLF ARFRKNTKRI GPTLPPLPPH SSDNGYRDYS  60
   61 NKSIDRRDEG TEKTDEETLI GVSPRRECDL DEKDVFLLPE FEEEAKKLDL LVCDDCETPR 120
  121 SDITAPLAFP SEEEADHENE INRLRNTVRA LRERERCLED KLLEYYSLKE QQKIAMELRS 180
  181 RLKLNQMETK VFNFKIKKLQ AENEKLKAEC FEHSKVLLEL DMAKSQVQVL KKKLNINTQQ 240
  241 HVAQILSLKQ RVARLQEEEI KAVLP

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.39
Match: 2i1jA
Description: No description for 2i1jA was found.

Predicted Domain #2
Region A:
Residues: [266-573]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLEADKMMQR LRDLESEINE LTDTNTRLQF ENFELSEKLE SVQIIANSKL EEPEEIETLR  60
   61 EDCNRLRSEN EELKKDVEQL QGDRCTDLEQ LVYLRWINAC LRYELRTYQP PAGKTVARDL 120
  121 STTLSPTSEE KAKQLILEYA HSEDNTDYDR WSSSQEESSM ITDSMFLDDS SVDTLFATKT 180
  181 KKTGKKKLMH KLMKILHGKD TKDSKKRAGS SEPSSSNTGV HSTPRQLRST HSMDFQMLMR 240
  241 GKDEEEDFKN HIVMLRRKSE AAGSSTYGEE HCLETDQNGK KELIKLADAL TKSRSTKKLH 300
  301 KKSVSFFF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.69897
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle