YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: HPP5_ARATH
Organism: Arabidopsis thaliana
Length: 374 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HPP5_ARATH.

Description E-value Query
Range
Subject
Range
HHP4_ARATH - Heptahelical transmembrane protein 4 OS=Arabidopsis thaliana GN=HHP4 PE=2 SV=1
308.0 [0..1] [374..1]

Back

Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDEAEIKEH LKPQASSETI DKKHNVKGKR LWQKVKYQLV EFHSLPAYLR DNEYIIGHYR  60
   61 SEWPIKQILL SIFTIHNETL NVWTHLIGFF LFLALTIYT

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.964
Match: 2qraD
Description: No description for 2qraD was found.

Predicted Domain #2
Region A:
Residues: [100-213]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATKVPSVVDL HSLQHRLPDL LRKTDLHKLH SELMSRLPSS PSSWHVMDLL YNCLPERFSH  60
   61 GNYTDMCVLH SVREDLANLI APLIFRPITR WPFYAFLGGA IFCLLASSTC HLLS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [214-374]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CHSERVSYIM LRLDYAGIAA LIATSFYPPV YYSFMCDPFF CNLYLGFITI LGIATVLVSL  60
   61 LPVFQSLEFR VVRASLFFGM GFSGLAPILH KLIIFWDQPE ALHMTGYEIL MGLLYGLGAV 120
  121 VYATRIPERW MPGKFDIAGH SHQLFHVLVV AGALTHYRAG L

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle