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View Structure Prediction Details

Protein: Y5133_ARATH
Organism: Arabidopsis thaliana
Length: 458 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y5133_ARATH.

Description E-value Query
Range
Subject
Range
gi|110741235 - gi|110741235|dbj|BAF02168.1| hypothetical protein [Arabidopsis thaliana]
415.0 [0..1] [458..1]

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Predicted Domain #1
Region A:
Residues: [1-303]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFPTIPHES NVVSINVGGR IFQTTKQTLS LAGTDSLLSQ LATETTRFVD RDPDLFSVLL  60
   61 YILRTGNLPA RSRAFDVRDL IDESRYYGIE SFLIDSLSNS SQFEPFDLRR SRILQLNGRD 120
  121 SPSSISPTVI GGGLHVAHGS KITSFDWSLR QKSTVLTNFS AVDSLLEISP GVLAAGATDF 180
  181 PGLQIIDLDN GGFVRTTLNW ENVTRSSSTV QAIGSSHEFL FTSFESSRRN SNSIMVYDLS 240
  241 SLLPVSEIDH CEIYGADIDS AIPSTKLKWI QSCNLLMVSG SHTSPSGVNG HIRFWDVRSR 300
  301 NMV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.154902
Match: 2a79B
Description: Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [304-458]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WEIKEAQDCF SDVTVSDNLS AVFKVGVTSG EVFYADLRSL GTKDPWVCLG EEKKRNLNER  60
   61 RGVGSKIESY GNHVFCSSKG SGIELWSEVI TGLVGNASRD VLEERVFRKN SLGKLADSGE 120
  121 NKITGLAFGG NRMFVTRKDQ QSVQVWQSPS RGISI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle