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View Structure Prediction Details

Protein: gi|9502411, gi|2...
Organism: Arabidopsis thaliana
Length: 459 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9502411, gi|2....

Description E-value Query
Range
Subject
Range
gi|20466324, gi|... - gi|25084031|gb|AAN72159.1| unknown protein [Arabidopsis thaliana], gi|20466324|gb|AAM20479.1| unknow...
293.0 [0..1] [459..1]
gi|78708421, gi|... - gi|78708421|gb|ABB47396.1| expressed protein [Oryza sativa (japonica cultivar-group)], gi|110289009|...
244.0 [0..76] [456..26]
gi|92867117 - gi|92867117|gb|ABE77500.1| Plant protein of unknown function (DUF641), putative [Medicago truncatula...
235.0 [0..63] [459..70]

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Predicted Domain #1
Region A:
Residues: [1-362]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METLKKNPSV RRKSKLARTF QKVCNLRTTS TKVSSNNGIG ICMLKSQNPN FDDEDDDGDS  60
   61 VFDLKSTSSS RSGEIKVRER NRAVLQAVVA KIFASTTSIK AAYAELQMAQ RPYDNDAIQA 120
  121 ADTAVVEELR ALSELKRSFL RKELNLSPQV AIMLAEIQEQ QSLMRTYEIT IKKLEFEVTE 180
  181 KQLKIDELKM SFEESLVVNK SLEKKLSASG SVSVFDNIEI RNLNLSSFVQ VLGFTLRSVR 240
  241 SFVKLIVKEM ESASWDLDAA ASAAVSVNVK NASTVFARPS HRCFAFESFV CGKMFENFGA 300
  301 PDFSRREEFE KLRSVDPIQY LTRNPGSSFA RFVVHKYLSV VHAKMECSFF GNLNQRKLVN 360
  361 SG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.0
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [363-459]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFPDSGFFAT FCEMAKRIWL LHCLAFSLSG NVTVFQLKRG CRFSQVYMES VKSGDESLFS  60
   61 GDNSDIRVGF TVVPGFKIGE NVIQSQVYLT PVNGFTS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle