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View Structure Prediction Details

Protein: gi|9294269, gi|1...
Organism: Arabidopsis thaliana
Length: 1018 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9294269, gi|1....

Description E-value Query
Range
Subject
Range
gi|37930527, gi|... - gi|37930527|gb|AAP74661.1| elicitor-like transglutaminase M81 [Phytophthora infestans], gi|23505399|...
502.0 [0..2] [1012..505]

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Predicted Domain #1
Region A:
Residues: [1-208]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPSAHLVYA IGVIIMATMV AAYEPYTDSS PPPYSVPLPK VEYKSPPLPD VYSSPPPPLE  60
   61 YSPAPKVDYK SPPPPYYSPS PKVEYKSPPP PYVYNSPPPP YYSPSPKVDY KSPPPPYVYS 120
  121 SPPPPIYSPS PKVDYKSPPP PYVYSSPPPP YYSPSPKVEY KSPPSPYVYN SPPPSYYSPS 180
  181 PKVDYKSPPP PYVYSSPPPP YYSPSPKV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [209-273]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VYKSPPPPYV YSSPPPPYYS PSPKVDYKSP PPPYVYSSPP PPYYSPSPKI VYKSPPPPYV  60
   61 YSSPP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [274-387]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPYYSPSPKV DYKSPPPPYV YSSPPPPYYS PSPKVVYKSP PPPYVYSSPP PPYYSPTPKV  60
   61 DYKSPPPPYV YSSPPPPYYS PSPKVDYKSP PPPYVYSSPP PPYYSPSPKI VYKS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [388-589]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPPPYVYSSP PPPYYTPSPK VVYKSPPPPY VYSSPPPPYY SPSPKVDYKS PPPPYVYSSP  60
   61 PPPYYSPSPK VVYKSPPPPY VYSSPPPPYY SPSPKVDYKS PPPPYVYSSP PPPYYSPSPK 120
  121 VLYKSPPPPY VYSSPPPPYY SPSPKVVYKS PPPPYVYSSP PPPYYSPSPK VVYKSPPPPY 180
  181 VYSSPPPPYY SPSPKVVYKS PP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [590-709]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPYVYSSPPP PYYSPSPKVY YKSPPSPYHA PSPKVLYKSP PHPHVCVCPP PPPCYSPSPK  60
   61 VVYKSSPPPY VYSSPPPPYH SPSPKVHYKS PPPPYVYSSP PPPYYSPSPK VHYKSPPPPY 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [710-820]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VYSSPPPPYY SPSPKVVYKS PPPPYVYSSP PPPYYSPSPK VVYKSPPPPY VYSSPPPPYY  60
   61 SPSPKVVYKS PPPPYVYSSP PPPYYSPSPK VVYKSPPPPY VYSSPPPPYY S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [821-926]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSPKVVYKSP PPPYVYSSPP PPYYSPSPKV VYKSPPPPYV YSSPPPPYYS PSPKVDYKSP  60
   61 PPPYVYSSPP PPYYSPSPKV DYKSPPPPYV YSSPPPPYYS PSPKVD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [927-1018]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YKSPPPPYVY SSPPPPYYSP APKVDYKSPP PPYVYSSPPP PYYSPSPKVD YKSPPPPYYS  60
   61 PSPKVDYKSP PPPYVYSSPP PPSYSPSPKT EY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle