YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7487485, gi\|3...
Organism:	Arabidopsis thaliana
Length:	420 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7487485, gi|3....

Description	E-value	Query Range	Subject Range
gi\|56967372, gi\|... - gi\|62821820\|ref\|NP_001017359.1\| O-linked N-acetylglucosamine transferase isoform 1 [Danio rerio], gi...	291.0	[0..1]	[418..95]
gi\|76659271 - gi\|76659271\|ref\|XP_884992.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 7 [...	288.0	[0..1]	[418..95]
gi\|47222947 - gi\|47222947\|emb\|CAF99103.1\| unnamed protein product [Tetraodon nigroviridis]	287.0	[0..1]	[418..73]
gi\|91079875 - gi\|91079875\|ref\|XP_967579.1\| PREDICTED: similar to CG10392-PB, isoform B [Tribolium castaneum]	287.0	[0..1]	[418..232]
gi\|74007684 - gi\|74007684\|ref\|XP_858918.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 11 ...	286.0	[0..1]	[418..95]
gi\|13775066 - gi\|13775066\|gb\|AAK39123.1\|AF363030_1 UDP-N-acetylglucosaminyltransferase [Mus musculus]	286.0	[0..1]	[418..95]

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Predicted Domain #1

Region A:
Residues: [1-420]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQGPSSEDD CFSLLKQFEH VLESDPLIDE VGFIHPSQFT MLDKEAGFSN EFQPNNGTSS  60
   61 KFWNQDHKLG ISTDILVQLC KDAKHVFLLA LQEYKSHGNA CDESQIKNIS CSPCIPESDV 120
  121 MKHSQSVLLL SSDFGTAWNA RKLILSKKDH LSAFTEELRL SGLILSNSPK SESTWSHRRW 180
  181 IIKMISQSFS TLQEIITKES ELVESIGERS KMNYRAWYHR CWLVSYMTIE QVIQELNKSK 240
  241 RWAGLHVADS SCFHYRRRLM LKILESLYVK GSSAYDKTEA RKIWKEELDW NEELVERYVG 300
  301 REALWLHRRF LSLNWIMYFA CNHSDASPET GESIIMNEEI AIFIDNEIRL LDSSMTVPDT 360
  361 KFEDFQAQAL HAAVYTLWLT KSIPVLWRML EEKLGTEKVK CVLNTIAQER PSLLHHLVNV 420
  421

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.39794
Match:	1w3bA
Description:	The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits