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View Structure Prediction Details

Protein: REV1_ARATH
Organism: Arabidopsis thaliana
Length: 1105 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for REV1_ARATH.

Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRSLGSNSS NNSGSGSNKK SKKNNNPSNQ KTLGAAWGAA SSRSSFRSSP FSDFGSYMEV  60
   61 KNRKLQNQFE TEASAASRGV 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [81-177]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGSEKLIFQG VSIFVDGFTI PSHQELKGYM MKYGGRFENY FSRRSVTHII CSNLPDSKVK  60
   61 NLRTFSRGLP VVKPTWIVDS ISANRLLGWV PYQLDQL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.522879
Match: 2ebwA
Description: No description for 2ebwA was found.

Predicted Domain #3
Region A:
Residues: [178-323]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDTQPKLSAF FAPRSHLTPQ MASPVTSFQP DTGYSEAEEG SSIRADDSEE ARDHIDDEID  60
   61 GVYIENTTPE LTEQTGTGDL KSSEMNAEGL GNYDIEEKEV SSELQSTTNL HSTSDNKSVH 120
  121 ANGKNGGKSI ATAAGSSTRR HSTLED

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [324-797]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNFVENYFKN SRLHFIGTWR NRYRKRFHGS SNGLKWADSG QNTAEMAKKS TIIHIDLDCF  60
   61 FVSVVIKNRL ELHDKPVAVC HSDNPKGTAE ISSANYPARA YGVKAGMFVR HAKDLCPQLV 120
  121 IVPYNFEAYE EVADQFYDIL HRHCRKVQAL SCDEAFLDVS DLSDVETEVL ASTIRNEILE 180
  181 TTGCSASAGI GGTMLMARLA TRVAKPAGQL YISAEKVEEF LDQLPVGTLP GVGSVLKEKL 240
  241 VKQNIQTCGQ LRLISKDSLQ KDFGVKTGEM LWSYSRGLDL RSVTAVQESK SIGAEVNWGV 300
  301 RFRDQQDVFI LVQHFLQCLC KEVSLRLQGC EMIGRTFTLK IKKRKKDAEE PTKYMGCGDC 360
  361 DNLSRSITVP AATDDIEVLQ RISKKLFGSF CLDVKEVRGV GLQVSKLDSA DPSNKGSRTL 420
  421 KSWLSSAPAV VQIEQDDNVF AAKVRENSDC NRPVTGGVSR LRESNSEESS IQSG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.0
Match: 2aq4A
Description: Ternary complex of the catalytic core of REV1 with DNA and dCTP.
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [798-884]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTNSSLPPMC YLDMEVLENL PPELLSELDG TYGGKLFELI EKKRGKRRIN CNSPHVSLDG  60
   61 TAASIKELKS LSVKIHGLST SGEKEYK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [885-1105]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPYVPHPSIA RTSNQHTIEM TDLLPSSLSQ VDVSVLQELP EELRADVLGA FPSHRRQQSS  60
   61 SDVPKETCKK QDEEPIDLKG TENEIGLSFS SLWFGNPPLW TEKFKVSGNC TMEKLSAIYF 120
  121 KVAQSRPMLS LVLQHAISEM SSFPDAASAS DLDKAIYDVC ELLKQYINLK VGGDIEEIYL 180
  181 CFRLLKRLAA RSQLFLQVYE ILSPFIQASI SEHYGGSLSI P

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle