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View Structure Prediction Details

Protein: gi|15028319, gi|...
Organism: Arabidopsis thaliana
Length: 297 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15028319, gi|....

Description E-value Query
Range
Subject
Range
gi|145332667, gi... - gi|145332667|ref|NP_001078199.1| structural constituent of cell wall [Arabidopsis thaliana], gi|1199...
176.0 [0..16] [294..1184]

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Predicted Domain #1
Region A:
Residues: [1-201]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSRVLASFF VFLIFTVITL PPTIQACTPC TRPHPPVPKP PQHGGGGGGG SKPPPHHGGK  60
   61 GGGKPPPHGG KGGGPPHHGG GGGGGGKSPP VVRPPPVVVR PPPIIRPPPV VYPPPIVRPP 120
  121 PITRPPIIIP PIQPPPVTTP PGLLPPITTP PGLLPPVTTP PGLLPPVTTP PGLLPPIINP 180
  181 PPVTVPPPSS GYPPYGPPSG G

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.45
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #2
Region A:
Residues: [202-297]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGGGGGKQPT CPINALKLGA CVDVLGGLIH IGLGNPVENV CCPVLQGLLE LEAAVCLCTT  60
   61 IRLKLLNLNI FIPLALQALI TCGINPPSGF VCPPLT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.0
Match: 1hypA
Description: CRYSTAL STRUCTURE OF HYDROPHOBIC PROTEIN FROM SOYBEAN; A MEMBER OF A NEW CYSTINE-RICH FAMILY
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle