YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|9758274, gi|3...
Organism: Arabidopsis thaliana
Length: 112 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9758274, gi|3....

Description E-value Query
Range
Subject
Range
gi|113411549, gi... - gi|113412478|ref|XP_001131332.1| PREDICTED: similar to suppressor of initiator codon mutations, rela...
177.0 [0..4] [112..178]

Back

Predicted Domain #1
Region A:
Residues: [1-112]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVELDIQIPS AYDPFAEAKD SDAPGAKENI HIRIQQRNGK KSLTTVQGLK KEYSYERILK  60
   61 DLKKDFCCNG NVVQDKELGK IIQLQGDQRK KVSQFLVQTG IAKKDQIKIH GF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.522879
Match: 2if1A
Description: HUMAN TRANSLATION INITIATION FACTOR EIF1, NMR, 29 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
translation initiation factor activity 6.56930940751046 bayes_pls_golite062009
nucleic acid binding 2.96971687610169 bayes_pls_golite062009
binding 2.42849959483419 bayes_pls_golite062009
translation regulator activity 2.27579767245564 bayes_pls_golite062009
translation factor activity, nucleic acid binding 2.25914933413253 bayes_pls_golite062009
protein binding 0.420735403363425 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle