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View Structure Prediction Details

Protein: PTR41_ARATH
Organism: Arabidopsis thaliana
Length: 548 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTR41_ARATH.

Description E-value Query
Range
Subject
Range
PTR1_ARATH - Protein NRT1/ PTR FAMILY 8.1 OS=Arabidopsis thaliana GN=NPF8.1 PE=1 SV=1
281.0 [0..2] [533..11]

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Predicted Domain #1
Region A:
Residues: [1-386]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANSDSGDKE AHRSSKHGGW ITLPFMLVTL LGMSITYFGW VMNLIVFLIE EFNIKSIAAV  60
   61 QISNIVNGVV NMLPVVAAIL ADSFFGNIPV ISASAFISLT GISLLTLIAS LDYLRPRPCE 120
  121 TGSILCQSPS KLQLGILYAA LALVITGTAG TRFILASAGA NQYKKPKEQG RFFNWYFFTL 180
  181 YGGAITGTTA IVYAQDNASW KLGFGLCVAA NLISFIIFVA GKRLYEHDQP LGSPYTSLVR 240
  241 VLVAATMKRK AVISYKDEDY HHRELEKETK TYVAMPSKSF RFLNRAALKT EGDSNNNMWR 300
  301 LCSVQEVEDF KAVLRLVPLW TSVMFLSAPL AVQMSMTVLQ AMVMDRKLGP HFKVSAGSMQ 360
  361 VIALVSGCVF IILNNWTTYP MYQKLI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.0
Match: 2gfpA
Description: No description for 2gfpA was found.

Predicted Domain #2
Region A:
Residues: [387-548]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKPLTPLQKV GIGHVLTILS MAISAVVEAK RLKTVENSHL MSVLWLVPAL VINGIGEAFH  60
   61 FPANIAIFYG EFPESLRNTA TSLTSVVMGI SFYLSTALID VIQRTTKWLP NDINHGRVDN 120
  121 VYLVLVIIGV SNFGYFLVCS WFYKYRNLKN DDHEQDLKDV TN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.71
Match: 2v8nA
Description: No description for 2v8nA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle