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View Structure Prediction Details

Protein: gi|6850837, gi|1...
Organism: Arabidopsis thaliana
Length: 170 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6850837, gi|1....

Description E-value Query
Range
Subject
Range
gi|37932561 - gi|37932561|gb|AAP76420.1| RAG1 protein [Tamiops swinhoei]
139.0 [0..3] [168..151]

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Predicted Domain #1
Region A:
Residues: [1-170]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFPVGYTEV FLPKLFVQTL SILGFIRTIV FSIFRFLGLS DFLEMDQTWP DYTSYPTRIP  60
   61 ETRSPFSALL IREILPVIKF EELTNSGEDL PENCAVCLYE FEGEQEIRWL RNCRHIFHRS 120
  121 CLDRWMDHDQ KTCPLCRTPF VPDEMQEEFN QRLWAASGVH DFHCPVTELL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.522879
Match: 1rmdA
Description: RAG1 DIMERIZATION DOMAIN
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.0938889867773109 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle