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View Structure Prediction Details

Protein: CDPK2_ARATH
Organism: Arabidopsis thaliana
Length: 646 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDPK2_ARATH.

Description E-value Query
Range
Subject
Range
gi|92110524, gi|... - gi|92110524|gb|ABE73346.1| putative calcium-dependent protein kinase 2 [Isatis tinctoria], gi|921105...
482.0 [0..1] [645..1]

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Predicted Domain #1
Region A:
Residues: [1-162]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNACVGPNI SGNGFLQTVT AAMWRPRIGA EQASSSSHGN GQVSKEAASE PATDQVQNKP  60
   61 PEPITMPSSK TNPETKLKPD LEIQPEEKKE KVLAEETKQK VVPEESKQEV PPEESKREVV 120
  121 VQPESAKPET KSESKPETTK PETTSETKPE TKAEPQKPKH MR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.93
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #2
Region A:
Residues: [163-469]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVSSAGLRTE SVLQRKTENF KEFYSLGRKL GQGQFGTTFL CLEKGTGNEY ACKSISKRKL  60
   61 LTDEDVEDVR REIQIMHHLA GHPNVISIKG AYEDVVAVHL VMELCSGGEL FDRIIQRGHY 120
  121 TERKAAELAR TIVGVLEACH SLGVMHRDLK PENFLFVSRE EDSLLKTIDF GLSMFFKPDE 180
  181 VFTDVVGSPY YVAPEVLRKR YGPESDVWSA GVIVYILLSG VPPFWAETEQ GIFEQVLHGD 240
  241 LDFSSDPWPS ISESAKDLVR KMLVRDPKRR LTAHQVLCHP WVQIDGVAPD KPLDSAVLSR 300
  301 MKQFSAM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 76.221849
Match: 2bdwA
Description: Crystal Structure of the Auto-Inhibited Kinase Domain of Calcium/Calmodulin Activated Kinase II
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [470-646]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKFKKMALRV IAESLSEEEI AGLKQMFKMI DADNSGQITF EELKAGLKRV GANLKESEIL  60
   61 DLMQAADVDN SGTIDYKEFI AATLHLNKIE REDHLFAAFS YFDKDESGFI TPDELQQACE 120
  121 EFGVEDARIE EMMRDVDQDK DGRIDYNEFV AMMQKGSIMG GPVKMGLENS ISISLKH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.522879
Match: 2aaoA
Description: Regulatory apparatus of Calcium Dependent protein kinase from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle