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View Structure Prediction Details

Protein: gi|6850340, gi|1...
Organism: Arabidopsis thaliana
Length: 124 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6850340, gi|1....

Description E-value Query
Range
Subject
Range
gi|69111664 - gi|69111664|gb|AAZ03394.1| Aqp4-Luc fusion protein [Reporter vector pmuAqp4-Luc]
138.0 [0..3] [124..85]

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Predicted Domain #1
Region A:
Residues: [1-124]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVDEVSIFI GVASLTVSVW WFINKFTYLE AVPTSNAIPI HSVAVRVGST QRVVMEIIIT  60
   61 FALVYTVYAT AIDSNNGTLG TIAPLAIRLI VGANILAAGP FSGGPMNPGR SFGSSLAVGN 120
  121 FSGH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.221849
Match: 2d57A
Description: Double layered 2D crystal structure of AQUAPORIN-4 (AQP4M23) at 3.2 a resolution by electron crystallography
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle