YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|8953723, gi|1...
Organism: Arabidopsis thaliana
Length: 238 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|8953723, gi|1....

Description E-value Query
Range
Subject
Range
gi|8953724, gi|1... - gi|8953724|dbj|BAA98087.1| unnamed protein product [Arabidopsis thaliana], gi|15237234|ref|NP_200081...
161.0 [0..1] [159..1]
gi|115471641, gi... - gi|50936147|ref|XP_477601.1| putative heavy-metal-associated domain-containing protein [Oryza sativa...
140.0 [0..5] [207..47]
gi|116309353, gi... - gi|116309353|emb|CAH66435.1| OSIGBa0132D06.1 [Oryza sativa (indica cultivar-group)], gi|116309351|em...
122.0 [0..4] [181..71]

Back

Predicted Domain #1
Region A:
Residues: [1-77]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVETVEFKM DVSDENIKRE VMKIVWMPGV TFVDIKEKGI LKVKGKYDKI QMGSKLHELD  60
   61 NSVDIINQMG KTGQYRI

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.13
Match: 2crlA
Description: The apo form of HMA domain of copper chaperone for superoxide dismutase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [78-238]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSLTSVYSYF TTPNIQEVVV FKFKVLDEKM KLDAMEVIWE FSGITSVEVK RDNQLEVKGG  60
   61 EFNKIAMSTK LKEIDESVSV IIKSGPDGQV DVTNIKINNA RKTSRVPAPV PVRAPAPTPK 120
  121 PAPAPPSVPA SVAAYANMRL YVHKTPIWKK CFRAISCGLY R

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.0
Match: 1qupA
Description: Copper chaperone for superoxide dismutase, C-terminal domain; Copper chaperone for superoxide dismutase, N-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle