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View Structure Prediction Details

Protein: gi|25411949, gi|...
Organism: Arabidopsis thaliana
Length: 173 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25411949, gi|....

Description E-value Query
Range
Subject
Range
gi|9293884 - gi|9293884|dbj|BAB01787.1| Ac-like transposase [Arabidopsis thaliana]
184.0 [0..1] [172..456]

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Predicted Domain #1
Region A:
Residues: [1-173]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQALYSLET RFEQFQRYEQ IFGFLFDLKK LQSASDDSLM ASCTNLKDAL THGTHSDILA  60
   61 SDLFYELKIL REALPKEVRR PIEVLDFLQK VEGCYPNSWI AYQVLLTIPV SVASAERSFS 120
  121 KLKLIKSYLR SSMSQERLSD LAILSIERAL VREVDFERLA NDFVGKKGRR ITL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.0
Match: 2bw3A
Description: Three-dimensional structure of the Hermes DNA transposase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle