| Protein: | VSR3_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 628 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VSR3_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
413.0 | [0..23] | [628..23] |
|
Region A: Residues: [1-198] |
1 11 21 31 41 51
| | | | | |
1 MKQLLCYLPW LLLLTLLVSP LNDARFVVEK NSLSVTSPES IKGTHDSAIG NFGIPQYGGS 60
61 MAGTVVYPKE NQKSCKEFSD FSISFKSQPG ALPTFLLVDR GDCFFALKVW NAQKAGASAV 120
121 LVADNVDEPL ITMDTPEEDV SSAKYIENIT IPSALVTKGF GEKLKKAISG GDMVNLNLDW 180
181 REAVPHPDDR VEYELWTN
|
| Detection Method: |  |
| Confidence: | 2.01 |
| Match: | 2ootA |
| Description: | No description for 2ootA was found. |
|
Region A: Residues: [199-628] |
1 11 21 31 41 51
| | | | | |
1 SNDECGVKCD MLMEFVKDFK GAAQILEKGG FTQFRPHYIT WYCPHAFTLS RQCKSQCINK 60
61 GRYCAPDPEQ DFSSGYDGKD VVVENLRQLC VYKVANETGK PWVWWDYVTD FQIRCPMKEK 120
121 KYNKECADSV IKSLGIDSKK LDKCMGDPDA DLDNPVLKEE QDAQVGKGSR GDVTILPTLV 180
181 VNNRQYRGKL EKSAVLKALC SGFEETTEPA ICLSTDVESN ECLDNNGGCW QDKSANITAC 240
241 KDTFRGRVCE CPTVDGVQFK GDGYSHCEPS GPGRCTINNG GCWHEERDGH AFSACVDKDS 300
301 VKCECPPGFK GDGTKKCEDI NECKEKKACQ CPECSCKNTW GSYECSCSGD LLYIRDHDTC 360
361 ISKTGAQVRS AWAAVWLIML SLGLAAAGAY LVYKYRLRQY MDSEIRAIMA QYMPLDSQPE 420
421 IPNHVNDERA
|
| Detection Method: | |
| Confidence: | 32.69897 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.286076792172079 | bayes_pls_golite062009 |
| protein binding | 0.14494900666454 | bayes_pls_golite062009 |
