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View Structure Prediction Details

Protein: SCRK2_ARATH
Organism: Arabidopsis thaliana
Length: 329 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCRK2_ARATH.

Description E-value Query
Range
Subject
Range
SCRK6_ARATH - Probable fructokinase-6, chloroplastic OS=Arabidopsis thaliana GN=At1g66430 PE=2 SV=1
287.0 [0..10] [328..64]

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Predicted Domain #1
Region A:
Residues: [1-329]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSNGDNKG LVVSFGEMLI DFVPTESGVS LSESSGFLKA PGGAPANVAI AVSRLGGRAA  60
   61 FVGKLGDDEF GHMLAGILRK NDVDDQGINF DKGARTALAF VTLRSDGERE FMFYRNPSAD 120
  121 MLLRPDELNL ELIRSAKVFH YGSISLITEP CRSAHMKAME VAKEAGALLS YDPNLREPLW 180
  181 PSPEEARKQI MSIWDKADII KVSDVELEFL TGNKTIDDET AMSLWHPNLK LLLVTLGENG 240
  241 CRYYTKDFHG SVETFHVDAV DTTGAGDSFV GALLNQIVDD QSVLEEEERL RKVLRFANAC 300
  301 GAITTTKKGA IPALPTDCEA LSFLKIQVE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.69897
Match: 1tyyA
Description: Crystal structure of aminoimidazole riboside kinase from Salmonella enterica
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ribokinase activity 4.13972810632318 bayes_pls_golite062009
carbohydrate kinase activity 2.49008585493084 bayes_pls_golite062009
2-dehydro-3-deoxygluconokinase activity 2.46896350528821 bayes_pls_golite062009
kinase activity 1.97263499488006 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.9404172142043 bayes_pls_golite062009
catalytic activity 1.74474587246986 bayes_pls_golite062009
transferase activity 1.45532444493305 bayes_pls_golite062009
phosphofructokinase activity 1.00534507358024 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.562479151224388 bayes_pls_golite062009
binding 0.110689912513147 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle