YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11357287, gi\|...
Organism:	Arabidopsis thaliana
Length:	951 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11357287, gi|....

Description	E-value	Query Range	Subject Range
gi\|70878483 - gi\|70878483\|gb\|EAN91735.1\| trans-sialidase, putative [Trypanosoma cruzi] gi\|71649745 - gi\|71649745\|ref\|XP_813586.1\| trans-sialidase [Trypanosoma cruzi strain CL Brener]	323.0	[0..17]	[948..692]
gi\|37930527, gi\|... - gi\|37930527\|gb\|AAP74661.1\| elicitor-like transglutaminase M81 [Phytophthora infestans], gi\|23505399\|...	281.0	[0..1]	[950..447]
gi\|145332667, gi... - gi\|145332667\|ref\|NP_001078199.1\| structural constituent of cell wall [Arabidopsis thaliana], gi\|1199...	271.0	[0..1]	[950..342]
gi\|11385307 - gi\|11385307\|pir\|\|A35175 mucin 1 precursor, repetitive splice form A [validated] - human	267.0	[0..2]	[950..122]
gi\|169767634 - gi\|169767634\|ref\|XP_001818288.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83766143 - gi\|83766143\|dbj\|BAE56286.1\| unnamed protein product [Aspergillus oryzae]	243.0	[0..4]	[948..29]
FP1_MYTCO - Adhesive plaque matrix protein OS=Mytilus coruscus GN=FP1 PE=2 SV=1	234.0	[0..12]	[847..31]
FP1_MYTED - Adhesive plaque matrix protein (Fragment) OS=Mytilus edulis GN=FP1 PE=1 SV=1	231.0	[0..63]	[946..3]
gi\|18025526, gi\|... - gi\|51518075\|ref\|YP_068003.1\| LF3 [Macacine herpesvirus 4], gi\|18025526\|gb\|AAK95470.1\| LF3 [cercopith...	226.0	[0..88]	[930..17]

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Predicted Domain #1

Region A:
Residues: [1-951]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPSTHLICA LGVVIMATMV AAYDPYTDSS PPPLYSSPLP KIEYKTPPLP YIDSSPPPTY  60
   61 SPAPEVEYKS PPPPYVYSSP PPPTYSPSPK VEYKSPPPPY VYSSPPPPTY SPSPKVEYKS 120
  121 PPPPYVYSSP PPPTYSPSPK VEYKSPPPPY VYSSPPPPTY SPSPKVEYKS PPPPYVYSSP 180
  181 PPPTYSPSPK VEYKSPPPPY VYSSPPPPYY SPSPKVEYKS PPPPYVYSSP PPPTYSPSPK 240
  241 VDYKSPPPPY VYSSPPPPYY SPSPKVEYKS PPPPYVYSSP PPPTYSPSPK VDYKSPPPPY 300
  301 VYSSPPPPYY SPSPKVDYKS PPPPYVYSSP PPPTYSPSPK VEYKSPPPPY VYSSPPPPTY 360
  361 SPSPKVEYKS PPPPYVYSSP PPPTYSPSPK VEYKSPPPPY VYSSPPPPTY SPSPKVEYKS 420
  421 PPPPYVYSSP PPPYYSPSPK VEYKSPPPPY VYSSPPPPTY SPSPKVDYKS PPPPYVYSSP 480
  481 PPPYYSPSPK VYYKSPPPPY VYSSPPPPYY SPSPKVYYKS PPPPYVYSSP PPPYYSPSPK 540
  541 VYYKSPPPPY YSPSPKVYYK SPPPPYVYSS PPPPYYSPSP KVYYKSPPPP YVYSSPPPPY 600
  601 HSPSPKVQYK SPPPPYVYSS PPPPYYSPSP KVYYKSPPPP YVYSSPPPPY YSPSPKVYYK 660
  661 SPPPPYVYSS PPPPYYSPSP KVYYKSPPHP HVCVCPPPPP CYSPSPKVVY KSPPPPYVYS 720
  721 SPPPPHYSPS PKVYYKSPPP PYVYSSPPPP YYSPSPKVHY KSPPPPYYAP TPKVHYKSPP 780
  781 PPYVYSSPPP PYYSPSPKVH YKSPPPPYVY SSPPPPYYSP SPKVEYKSPP PPYVYSSPPP 840
  841 PYYSPSPKVD YKSPPPPYVY SSPPPPYYSP SPKVDYKSPP PPYVYSSPPP PYYSPSPVVD 900
  901 YKSPPPPYVY SSPPPPYYSP SPKVEYKSPP PPYVYKSPPP PSYSPSPKTE Y

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.154902
Match:	1y0fB
Description:	No description for 1y0fB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits