YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20197895, gi\|...
Organism:	Arabidopsis thaliana
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20197895, gi|....

Description	E-value	Query Range	Subject Range
gi\|39589189, gi\|... - gi\|39589189\|emb\|CAE57922.1\| Hypothetical protein CBG00975 [Caenorhabditis briggsae], gi\|187038635\|em... gi\|157748913 - gi\|157748913\|ref\|XP_001678170.1\| Hypothetical protein CBG00975 [Caenorhabditis briggsae AF16]	111.0	[0..18]	[93..362]
CE01739 - status:Confirmed UniProt:Q09384 protein_id:CAA88441.1	103.0	[0..13]	[95..4]
CG13994-PA, FBpp... - This gene is referred to in FlyBase by the symbol Dmel\CG13994 (CG13994, FBgn0031772). It is a prote... gi\|220957912, gi... - gi\|220957912\|gb\|ACL91499.1\| CG13994-PA [synthetic construct], gi\|220951008\|gb\|ACL88047.1\| CG13994-PA...	101.0	[0..2]	[104..6]
PP1RB_DANRE - Protein phosphatase 1 regulatory subunit 11 OS=Danio rerio GN=ppp1r11 PE=1 SV=1	95.0	[0..4]	[89..7]
gi\|108876369, gi... - gi\|157116634\|ref\|XP_001658586.1\| hypothetical protein AaeL_AAEL007679 [Aedes aegypti], gi\|108876369\|...	93.0	[0..8]	[101..25]

Back

Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTATRPSSS ATTSVILENP VSQSQPTERL VLRLNRKKKK VSWKDGTVDN EFMQKKSSKK  60
   61 CCIFHKQKPF DEDDSEEEDD NNHHCDHNHE HSESGEASSS NDSKAVD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.216	d.16.1	FAD-linked reductases, C-terminal domain
View	Download	0.216	b.1.1	Immunoglobulin
View	Download	0.216	b.1.1	Immunoglobulin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits