YRC Public Data Repository - Protein Structure Prediction

Protein:	RPBCL_ARATH
Organism:	Arabidopsis thaliana
Length:	61 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPBCL_ARATH.

Description	E-value	Query Range	Subject Range
gi\|76673725 - gi\|76673725\|ref\|XP_601851.2\| PREDICTED: similar to sperm associated antigen 1 (predicted), partial [...	93.0	[0..1]	[50..70]
gi\|8248885 - gi\|8248885\|gb\|AAB27565.2\| metallothionein-I gene transcription activator [Mus sp.]	91.0	[0..1]	[50..48]
gi\|26359970, gi\|... - gi\|86355514\|ref\|NP_001034457.1\| polymerase (RNA) II (DNA directed) polypeptide K isoform a [Mus musc...	91.0	[0..1]	[50..42]
gi\|149066525, gi... - gi\|149066526\|gb\|EDM16399.1\| rCG59437, isoform CRA_a [Rattus norvegicus], gi\|149066525\|gb\|EDM16398.1\|... gi\|149721707 - gi\|149721707\|ref\|XP_001492225.1\| PREDICTED: similar to RNA polymerase II [Equus caballus] POLR3K, POLR2K - polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa, polymerase (RNA) III (DNA directed) polype... gi\|114621109 - gi\|114621109\|ref\|XP_001151505.1\| PREDICTED: DNA directed RNA polymerase II polypeptide K [Pan troglo... ENSCJAT000000430... - null, null, null gi\|109087128 - gi\|109087128\|ref\|XP_001096949.1\| PREDICTED: polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa... gi\|123995329, gi... - gi\|208967090\|dbj\|BAG73559.1\| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [synthetic con... CCDS6285.1_1 - null tr\|M3VXF4\|M3VXF4... - RNA polymerase II subunit K OS=Felis catus GN=POLR2K PE=4 SV=1 RPAB4_BOVIN - DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Bos taurus GN=POLR2K PE=1 SV=1	78.0	[0..1]	[50..1]
gi\|47229350 - gi\|47229350\|emb\|CAF99338.1\| unnamed protein product [Tetraodon nigroviridis]	74.0	[0..1]	[50..1]
gi\|89267208, gi\|... - gi\|89267208\|emb\|CAJ81412.1\| polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa [Xenopus tropic... gi\|51593702, gi\|... - gi\|51593702\|gb\|AAH78622.1\| Polr2kb protein [Xenopus laevis], gi\|49117015\|gb\|AAH72756.1\| Polr2ka prot...	73.0	[0..1]	[50..1]
gi\|91088349 - gi\|91088349\|ref\|XP_971479.1\| PREDICTED: similar to DNA-directed RNA polymerases I, II, and III 7.0 k...	68.0	[0..3]	[50..2]
gi\|65302885 - gi\|65302885\|emb\|CAI75263.1\| hypothetical protein, conserved [Theileria annulata] gi\|85000041 - gi\|85000041\|ref\|XP_954739.1\| hypothetical protein [Theileria annulata strain Ankara]	67.0	[0..15]	[50..13]

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Predicted Domain #1

Region A:
Residues: [1-61]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLQQSETDD KQPEQLVIYV CGDCGQENIL KRGDVFQCRD CGFRILYKKR ILDKKETRIG  60
   61 V

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.32
Match:	1i3qL
Description:	RBP12 subunit of RNA polymerase II
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits