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View Structure Prediction Details

Protein: gi|7573464, gi|2...
Organism: Arabidopsis thaliana
Length: 369 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7573464, gi|2....

Description E-value Query
Range
Subject
Range
gi|27311639, gi|... - gi|6091713|gb|AAF03425.1|AC010797_1 unknown protein [Arabidopsis thaliana], gi|6016726|gb|AAF01552.1...
261.0 [0..1] [369..1]
gi|218186680 - gi|218186680|gb|EEC69107.1| hypothetical protein OsI_38018 [Oryza sativa Indica Group]
gi|108862495, gi... - gi|222616921|gb|EEE53053.1| hypothetical protein OsJ_35788 [Oryza sativa Japonica Group], gi|2156786...
253.0 [0..1] [366..1]
gi|87240397 - gi|87240397|gb|ABD32255.1| Esterase/lipase/thioesterase [Medicago truncatula]
249.0 [0..8] [368..1]

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Predicted Domain #1
Region A:
Residues: [1-269]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGVTSSVAA KFAFFPPSPS SYKLVYDELT GLLLMNPFPH RENVEILKLP TRRGTEIVAM  60
   61 YVRHPMATST LLYSHGNAAD LGQMYELFIE LSIHLKVNLM GYDYSGYGQS TGKPSEHHTY 120
  121 ADIEAAYKCL EETYGAKQED IILYGQSVGS GPTLDLAARL PQLRAAVLHS PILSGLRVMY 180
  181 PVKKTYWFDI FKNIDKIPLV NCPVLVIHGT CDEVVDCSHG KQLWELSKEK YEPLWLEGGN 240
  241 HCDLEHYPEY IKHLKKFITT VERDLSSRA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.39794
Match: 1yr2A
Description: Structural and Mechanistic Analysis of Two Prolyl Endopeptidases: Role of Inter-Domain Dynamics in Catalysis and Specificity
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [270-369]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STAQLEKQSS DLEMPRQSVD RREKPRQSVD KREKEKPPKG PSKKSKLRIT FEQHLDRTRR  60
   61 SVDFHEKARK SVDHHQHHQN HHQIERGRKS VDRLDRVRSE 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle