| Protein: | PABP4_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 662 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PABP4_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
506.0 | [0..1] | [662..1] |
|
|
503.0 | [0..37] | [650..2] |
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|
501.0 | [0..37] | [650..2] |
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501.0 | [0..37] | [650..2] |
|
Region A: Residues: [1-210] |
1 11 21 31 41 51
| | | | | |
1 MAQVQAPSSH SPPPPAVVND GAATASATPG IGVGGGGDGV THGALCSLYV GDLDFNVTDS 60
61 QLYDYFTEVC QVVSVRVCRD AATNTSLGYG YVNYSNTDDA EKAMQKLNYS YLNGKMIRIT 120
121 YSSRDSSARR SGVGNLFVKN LDKSVDNKTL HEAFSGCGTI VSCKVATDHM GQSRGYGFVQ 180
181 FDTEDSAKNA IEKLNGKVLN DKQIFVGPFL
|
| Detection Method: |  |
| Confidence: | 53.0 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [211-429] |
1 11 21 31 41 51
| | | | | |
1 RKEERESAAD KMKFTNVYVK NLSEATTDDE LKTTFGQYGS ISSAVVMRDG DGKSRCFGFV 60
61 NFENPEDAAR AVEALNGKKF DDKEWYVGKA QKKSERELEL SRRYEQGSSD GGNKFDGLNL 120
121 YVKNLDDTVT DEKLRELFAE FGTITSCKVM RDPSGTSKGS GFVAFSAASE ASRVLNEMNG 180
181 KMVGGKPLYV ALAQRKEERR AKLQAQFSQM RPAFIPGVG
|
| Detection Method: | |
| Confidence: | 6.01 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [430-515] |
1 11 21 31 41 51
| | | | | |
1 PRMPIFTGGA PGLGQQIFYG QGPPPIIPHQ PGFGYQPQLV PGMRPAFFGG PMMQPGQQGP 60
61 RPGGRRSGDG PMRHQHQQPM PYMQPQ
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.491 | d.15.3 | MoaD/ThiS |
| View | Download | 0.491 | d.15.3 | MoaD/ThiS |
| View | Download | 0.432 | d.15.3 | MoaD/ThiS |
| View | Download | 0.257 | a.283.1 | Description not found. |
| View | Download | 0.250 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.245 | a.64.1 | Saposin |
| View | Download | 0.225 | a.60.2 | RuvA domain 2-like |
|
Region A: Residues: [516-662] |
1 11 21 31 41 51
| | | | | |
1 MMPRGRGYRY PSGGRNMPDG PMPGGMVPVA YDMNVMPYSQ PMSAGQLATS LANATPAQQR 60
61 TLLGESLYPL VDQIESEHAA KVTGMLLEMD QTEVLHLLES PEALNAKVSE ALDVLRNVNQ 120
121 PSSQGSEGNK SGSPSDLLAS LSINDHL
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| Detection Method: | |
| Confidence: | 30.39794 |
| Match: | 1g9lA |
| Description: | poly(A) binding protein |
Matching Structure (courtesy of the PDB): |
|
