YRC Public Data Repository - Protein Structure Prediction

Protein:	ATL34_ARATH
Organism:	Arabidopsis thaliana
Length:	327 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATL34_ARATH.

Description	E-value	Query Range	Subject Range
gi\|34597830 - gi\|34597830\|gb\|AAP03672.1\| recombination activating protein 1 [Fratercula arctica]	190.0	[0..8]	[251..140]
gi\|34597846 - gi\|34597846\|gb\|AAP03680.1\| recombination activating protein 1 [Himantopus mexicanus]	190.0	[0..8]	[251..140]
gi\|34597844 - gi\|34597844\|gb\|AAP03679.1\| recombination activating protein 1 [Haematopus ater]	190.0	[0..8]	[251..140]
gi\|34597856 - gi\|34597856\|gb\|AAP03685.1\| recombination activating protein 1 [Recurvirostra americana]	190.0	[0..8]	[251..140]
gi\|34223799 - gi\|34223799\|gb\|AAQ63068.1\| recombination activating gene 1 [Arvicanthis somalicus]	189.0	[0..9]	[252..139]
gi\|27884770 - gi\|27884770\|gb\|AAN46465.1\| recombination activating protein [Chauna torquata]	188.0	[0..8]	[251..145]
gi\|75863942 - gi\|75863942\|gb\|ABA29186.1\| recombination activating protein [Spheniscus mendiculus]	188.0	[0..8]	[251..95]
gi\|34597828 - gi\|34597828\|gb\|AAP03671.1\| recombination activating protein 1 [Sterna eurygnatha]	188.0	[0..8]	[251..140]
gi\|68236006 - gi\|68236006\|gb\|AAY88339.1\| recombination activating protein 1 [Malacomys longipes]	188.0	[0..9]	[252..137]
gi\|94483165 - gi\|94483165\|gb\|ABF22646.1\| recombination activating gene 1 [Strix occidentalis caurina]	188.0	[0..9]	[251..141]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIGKSPILL HHHVIFLLLL VLQVSGQHQP RTTAPPYIAQ RPNQVPAVII AMLMFTLLFS  60
   61 MLACCVCYKY TNTSPHGTSS DTEEGGHGEV AFTRRTSRGL GKDVINSFPS FLY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [114-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQVKGLKIGK GGVECAICLN EFEDEETLRL MPPCSHAFHA SCIDVWLSSR STCPVCRASL  60
   61 PPKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.39794
Match:	1iymA
Description:	EL5 RING-H2 domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [178-327]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSDQNSLYPF IRPHDNQDMD LENVTARRSV LESPDVRLLD RLSWSNNTGA NTPPRSRSTG  60
   61 LSNWRITELL FPRSHSTGHS LVPRVENLDR FTLQLPEEVR RQLSHMKTLP QARSSREGYR 120
  121 SGSVGSERRG KGKEKEFGEG SFDRLKAEMV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.214	N/A	N/A	d.123.1	Sporulation responce regulatory protein Spo0B
View	Download	0.214	N/A	N/A	d.123.1	Sporulation responce regulatory protein Spo0B

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits