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View Structure Prediction Details

Protein: RLF18_ARATH
Organism: Arabidopsis thaliana
Length: 103 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLF18_ARATH.

Description E-value Query
Range
Subject
Range
gi|28628203 - gi|28628203|gb|AAO27366.1| rapid alkalinization factor 1 precursor [Populus balsamifera subsp. trich...
121.0 [0..4] [99..6]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNNMKLLII AVMIISAALL PALVVGSRPV KCDNCMDGGE KEEIMKMSSG VDVSHRILQA  60
   61 KRFIDYEALK KNLPAKPDGK PDKPDNKYRR GCSAATGCYR FTN

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 26.065502
Match: PF05498.2
Description: No description for PF05498.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.508 N/A N/A d.56.1 GroEL-intermediate domain like
View Download 0.451 N/A N/A a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.356 N/A N/A a.3.1 Cytochrome c
View Download 0.318 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.262 N/A N/A a.4.5 "Winged helix" DNA-binding domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle