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View Structure Prediction Details

Protein: RTNLE_ARATH
Organism: Arabidopsis thaliana
Length: 255 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTNLE_ARATH.

Description E-value Query
Range
Subject
Range
RTNLF_ARATH - Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1
257.0 [0..1] [251..1]

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Predicted Domain #1
Region A:
Residues: [1-82]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEEIEKSVP TEESLMEKIS EKIHHHDSSS SSESEYEKPD SPSAVKAKIY RMFGREKPVH  60
   61 KVLGGGKPAD VFLWRDKKLS GA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.353 N/A N/A d.94.1 HPr-like
View Download 0.286 N/A N/A a.60.1 SAM/Pointed domain
View Download 0.261 N/A N/A d.94.1 HPr-like
View Download 0.236 N/A N/A a.64.1 Saposin
View Download 0.228 N/A N/A a.45.1 Glutathione S-transferase (GST), C-terminal domain

Predicted Domain #2
Region A:
Residues: [83-168]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLGVATAIWV LFELVEYHLL SLLCHISILA LGGLFLWSNA HTLINKTSPQ IPEIHVPEEA  60
   61 FLVVASSLRN ELNQAFVILR SIALGR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.09691
Match: 2g31A
Description: No description for 2g31A was found.

Predicted Domain #3
Region A:
Residues: [169-255]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLKKFLMVVV GLWIISVVGN WFNFLTLVYI CFVILHTVPM LYEKHEDKVD PLAEKAMKEL  60
   61 QKQYVVFDEK VLSKIPIASL KAKAKLG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle