YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15219216, gi\|...
Organism:	Arabidopsis thaliana
Length:	457 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15219216, gi|....

Description	E-value	Query Range	Subject Range
gi\|145335995, gi... - gi\|91805827\|gb\|ABE65642.1\| hypothetical protein At1g22100 [Arabidopsis thaliana], gi\|145335995\|ref\|N...	581.0	[0..1]	[457..1]
gi\|73947199 - gi\|73947199\|ref\|XP_541331.2\| PREDICTED: similar to chromosome 9 open reading frame 12 [Canis familia...	461.0	[0..1]	[453..204]
gi\|114625566, gi... - gi\|114625566\|ref\|XP_001146962.1\| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes], gi\|114...	459.0	[0..1]	[454..1]
IPPK - inositol 1,3,4,5,6-pentakisphosphate 2-kinase	456.0	[0..1]	[454..1]
gi\|109112300 - gi\|109112300\|ref\|XP_001103030.1\| PREDICTED: similar to inositol 1,3,4,5,6-pentakisphosphate 2-kinase...	455.0	[0..1]	[454..1]
IPPK_MOUSE - Inositol-pentakisphosphate 2-kinase OS=Mus musculus GN=Ippk PE=2 SV=1	451.0	[0..1]	[455..1]
IPPK_RAT - Inositol-pentakisphosphate 2-kinase OS=Rattus norvegicus GN=Ippk PE=2 SV=1	448.0	[0..1]	[455..1]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEIVLEPKD AVDWSYRGEG AVNLVLAYTG SSPSFLGKMM RIQKMPKDGN ENGDKSENGL  60
   61 TTHEKLIWGD VKDLVSCKNK EIEEYLFVKH VMRPLLGRKH VNPGVCFLFI S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [112-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSCHDSNAMI LLLVAKEFLE SVEKIITSQR PSWRADVASV DTNRSSVLLM DDLTLFAHGH  60
   61 VEDKPCLSVE IKPKCGFLPS SSFIAEENVI KKSITRFEMH QVLKLRE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [219-309]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEISEISEYD PLDLFSGSKE RILEAIKALY TTPQNNFRVF LNGSLVFGGL GGGICKTTSK  60
   61 VELAFEHILK DIIKTDDGLR ADRFIELVAE T

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [310-457]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VYTSGVLDQL LDVQKLDRYN IEGAIHVYYD FIDQPCKVCR ELNQFSSMHS IPMDEKVNIL  60
   61 KEFLISATAK DCSVMISFRS TEAGLSKSSS HSNLHLETTK QEFEYKVHFI DLDMRPLKKM 120
  121 EVYYELDKKI MNTYLEMLKK KGTQPQCL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits