Protein: | AGL24_ARATH |
Organism: | Arabidopsis thaliana |
Length: | 220 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AGL24_ARATH.
Description | E-value | Query Range |
Subject Range |
|
222.0 | [0..1] | [218..1] |
Region A: Residues: [1-80] |
1 11 21 31 41 51 | | | | | | 1 MAREKIRIKK IDNITARQVT FSKRRRGIFK KADELSVLCD ADVALIIFSA TGKLFEFSSS 60 61 RMRDILGRYS LHASNINKLM |
Detection Method: | |
Confidence: | 19.522879 |
Match: | 1tqeP |
Description: | Mechanism of recruitment of class II histone deacetylases by myocyte enhancer factor-2 |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
binding | 1.0368771990474 | bayes_pls_golite062009 |
Region A: Residues: [81-220] |
1 11 21 31 41 51 | | | | | | 1 DPPSTHLRLE NCNLSRLSKE VEDKTKQLRK LRGEDLDGLN LEELQRLEKL LESGLSRVSE 60 61 KKGECVMSQI FSLEKRGSEL VDENKRLRDK LETLERAKLT TLKEALETES VTTNVSSYDS 120 121 GTPLEDDSDT SLKLGLPSWE |
Detection Method: | |
Confidence: | 7.744727 |
Match: | PF01486.8 |
Description: | No description for PF01486.8 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.671 | N/A | N/A | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
View | Download | 0.660 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.593 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
View | Download | 0.531 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
View | Download | 0.491 | N/A | N/A | a.87.1 | DBL homology domain (DH-domain) |