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View Structure Prediction Details

Protein: GH34_ARATH
Organism: Arabidopsis thaliana
Length: 597 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GH34_ARATH.

Description E-value Query
Range
Subject
Range
gi|4468805, gi|1... - pir||T04733 auxin-regulated protein GH3 homolog F6G17.40 - Arabidopsis thaliana, gi|7270721|emb|CAB...
858.0 [0..1] [596..1]

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Predicted Domain #1
Region A:
Residues: [1-597]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVDSLLQSG MASPTTSETE VKALKFIEEI TRNPDSVQEK VLGEILSRNS NTEYLKRFDL  60
   61 NGAVDRKSFK SKVPVVIYED LKTDIQRISN GDRSPILSSH PITEFLTSSG TSAGERKLMP 120
  121 TIEEDINRRQ LLGNLLMPVM NLYVPGLDKG KGLYFLFVKS ESTTSGGLPA RPALTSYYKS 180
  181 DYFRTSDSDS VYTSPKEAIL CCDSSQSMYT QMLCGLLMRH EVNRLGAVFP SGLLRAISFL 240
  241 QNNWKELSQD ISTGTLSSKI FDHAIKTRMS NILNKPDQEL AEFLIGVCSQ ENWEGIITKI 300
  301 WPNTKYLDVI VTGAMAEYIP MLEYYSGGLP MASMIYASSE SYFGINLNPM CKPSEVSYTI 360
  361 FPNMAYFEFL PHNHDGDGGV EATSLVELAD VEVGKEYELV ITTYAGLYRY RVGDILRVTG 420
  421 FHNSAPQFKF IRRENVLLSI ESDKTDEADL QKAVENASRL LAEQGTRVIE YTSYADTKTI 480
  481 PGHYVIYWEL LSRDQSNALP SDEVMAKCCL EMEESLNAVY RQSRVSDKSI GPLEIRVVQN 540
  541 GTFEELMDFS ISRGSSINQY KVPRCVSLTP IMKLLDSRVV SAHFSPSLPH WSPERRH

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.01
Match: 1md9A
Description: Dihydroxybenzoate-AMP ligase DhbE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.927181813624701 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle