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View Structure Prediction Details

Protein: PX11D_ARATH
Organism: Arabidopsis thaliana
Length: 236 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PX11D_ARATH.

Description E-value Query
Range
Subject
Range
PX11C_ARATH - Peroxisomal membrane protein 11C OS=Arabidopsis thaliana GN=PEX11C PE=1 SV=1
262.0 [0..3] [234..2]
gi|8489788 - gi|8489788|gb|AAF75750.1|AF261140_1 unknown [Lycopersicon esculentum]
252.0 [0..3] [234..2]
gi|92886312, gi|... - gi|92886312|gb|ABE88269.1| Peroxisomal biogenesis factor 11 [Medicago truncatula], gi|124360856|gb|A...
248.0 [0..3] [235..2]
gi|113594700, gi... - gi|115466122|ref|NP_001056660.1| Os06g0127000 [Oryza sativa (japonica cultivar-group)], gi|113594700...
247.0 [0..3] [234..33]

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Predicted Domain #1
Region A:
Residues: [1-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTTLDVSRA ELALVVMYLN KAEARDKLCR AIQYGSKFLS GGQPGTAQNV DKSTSLARKV  60
   61 FRLFKFVNDL HGLISPVPKG TPLPLVLLGK SKNALLSTFL FLDQIVWLGR SGIYKNKERA 120
  121 ELLGRISLFC WMGSSVCTTL VEVGEMGRLS SSMKKIEKGL KNG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [164-236]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKYQDEDYRA KLKKSNERSL ALIKSAMDIV VAAGLLQLAP TKITPRVTGA FGFITSIISC  60
   61 YQLLPTRPKI KTP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle