YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: AB17G_ARATH
Organism: Arabidopsis thaliana
Length: 662 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AB17G_ARATH.

Description E-value Query
Range
Subject
Range
gi|66850438, gi|... - gi|70996096|ref|XP_752803.1| ABC transporter [Aspergillus fumigatus Af293], gi|66850438|gb|EAL90765....
gi|159131557 - gi|159131557|gb|EDP56670.1| ABC transporter, putative [Aspergillus fumigatus A1163]
gi|44890030 - gi|44890030|emb|CAF32148.1| ABC transporter, putative [Aspergillus fumigatus]
535.0 [0..5] [660..836]

Back

Predicted Domain #1
Region A:
Residues: [1-371]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQRDAVIDV DESEIPPIPF VLAFNDLTYN VTLQQRFGLR FGHSPAKIKT LLNGITGEAK  60
   61 EGEILAILGA SGAGKSTLID ALAGQIAEGS LKGTVTLNGE ALQSRLLRVI SAYVMQEDLL 120
  121 FPMLTVEETL MFAAEFRLPR SLSKSKKRNR VETLIDQLGL TTVKNTVIGD EGHRGVSGGE 180
  181 RRRVSIGTDI IHDPIVLFLD EPTSGLDSTS AFMVVQVLKK IARSGSIVIM SIHQPSGRIM 240
  241 EFLDRVIVLS SGQIVFSDSP ATLPLFFSEF GSPIPEKENI AEFTLDLIKD LEGSPEGTRG 300
  301 LVEFNRNWQH RKLRVSQEPH HNSSSLGEAI NASISRGKLV STSYRSIPSY VNPWWVETVI 360
  361 LAKRYMINWT R

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.69897
Match: 1z47A
Description: Structure of the ATPase subunit CysA of the putative sulfate ATP-binding cassette (ABC) transporter from Alicyclobacillus acidocaldarius
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [372-541]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPELIGTRVF IVMMTGFLLA TVYWKVDDSP RGVQERLSFF SFAMATMFYS CADGLPAFIQ  60
   61 ERYIFLRETA HNAYRRSSYV ISHSLVTLPH LFALSIGFAA TTFWFVGLNG GLAGFIYYLM 120
  121 IIFASFWSGC SFVTFVSGVI PNVMMSYMVT FGYLSYCLLF SGFYVNRDRI 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [542-662]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HLYWIWIHYI SLLKYPYEAV LHNEFDDPSR CFVRGNQVFD NTIMEGVSET TKAKLLETMS  60
   61 GYLGMELTES TCLTTGSDLL KQHGIEQLDK WGCLWVTLAW GFFFRILFYF SLLLGSKNKR 120
  121 A

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle