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View Structure Prediction Details

Protein: PEP2_ARATH
Organism: Arabidopsis thaliana
Length: 109 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEP2_ARATH.

Description E-value Query
Range
Subject
Range
gi|21617977 - gi|21617977|gb|AAM67027.1| unknown [Arabidopsis thaliana]
206.0 [0..1] [109..1]
gi|71834738 - gi|71834738|gb|AAZ41828.1| 80C09_17 [Brassica rapa subsp. pekinensis]
84.0 [0..1] [83..1]

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Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKLDKRREE ETYLWIPVQF LDQALIAVLK CIGLLCQPAK KTAPSPVTFN QPEEQEEDYG  60
   61 VALKDDDVVV LLRDNKAKSK KRDKEKPSSG RPGQTNSVPN AAIQVYKED

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.379 d.58.4 Dimeric alpha+beta barrel
View Download 0.335 d.129.11 Description not found.
View Download 0.326 d.110.7 Description not found.
View Download 0.315 a.121.1 Tetracyclin repressor-like, C-terminal domain
View Download 0.305 a.24.20 Description not found.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle