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View Structure Prediction Details

Protein: FTSHB_ARATH
Organism: Arabidopsis thaliana
Length: 806 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for FTSHB_ARATH.

Predicted Domain #1
Region A:
Residues: [1-86]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSTLQASL FLRPPLHTSS FKLYPCLFSS SSLSFCPQSL SSFYRLSSVL HNSRFRPLPC  60
   61 SLRQDNVASD SDFIPKDSAF EVTDSA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [87-186]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESNRLVSDTE VSELETNDRF VGGEETKSGG EEAEVSNGVT EGKEEDQKKS KFRIVVLMMA  60
   61 LWAAIKRAIE KVMEWEWLSW WPFSRQEKRL EKLIAEADAN 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.30103
Match: 2aneA
Description: Crystal structure of N-terminal domain of E.Coli Lon Protease
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [187-353]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKDAALQGAL LAELNKHIPE AVVQRFEQRE HTVDSRGVAE YIRALVITNA ISEYLPDEQT  60
   61 GKPSSLPALL QELKHRASGN MDESFVNPGI SEKQPLHVTM VNPKVSNKSR FAQELVSTIL 120
  121 FTVAVGLVWI MGAAALQKYI GSLGGIGTSG VGSSSSYSPK ELNKEIT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [354-584]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEKNVKTFKD VKGCDDAKQE LEEVVEYLKN PSKFTRLGGK LPKGILLTGA PGTGKTLLAK  60
   61 AIAGEAGVPF FYRAGSEFEE MFVGVGARRV RSLFQAAKKK APCIIFIDEI DAVGSTRKQW 120
  121 EGHTKKTLHQ LLVEMDGFEQ NEGIIVMAAT NLPDILDPAL TRPGRFDRHI VVPSPDVRGR 180
  181 EEILELYLQG KPMSEDVDVK AIARGTPGFN GADLANLVNI AAIKAAVEGA E

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 76.154902
Match: 1lv7A
Description: AAA domain of cell division protein FtsH
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [585-658]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLSSEQLEFA KDRIVMGTER KTMFVSEDSK KLTAYHESGH AIVALNTKGA HPIHKATIMP  60
   61 RGSALGMVTQ LPSN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [659-806]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DETSVSKRQL LARLDVCMGG RVAEELIFGL DHITTGASSD LSQATELAQY MVSSCGMSEA  60
   61 IGPVHIKERP SSDMQSRIDA EVVKLLREAY ERVKSLLKRH EKQLHTLANA LLEYETLTAE 120
  121 DIKRILLPKQ EGEKFEEQQQ EEGDLVLA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 123.0
Match: 2ce7A
Description: EDTA treated
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle