YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25337669, gi\|...
Organism:	Arabidopsis thaliana
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25337669, gi|....

Description	E-value	Query Range	Subject Range
gi\|42573049, gi\|... - pir\|\|T06005 hypothetical protein T25K17.20 - Arabidopsis thaliana, gi\|7269472\|emb\|CAB79476.1\| putat...	251.0	[0..1]	[122..1]
gi\|76160976 - gi\|76160976\|gb\|ABA40451.1\| unknown [Solanum tuberosum]	239.0	[0..1]	[122..1]
gi\|218188591 - gi\|218188591\|gb\|EEC71018.1\| hypothetical protein OsI_02711 [Oryza sativa Indica Group] gi\|115438228, gi... - gi\|50901924\|ref\|XP_463395.1\| P0025A05.24 [Oryza sativa (japonica cultivar-group)], gi\|215768142\|dbj\|...	233.0	[0..1]	[120..1]
gi\|102139975 - gi\|102139975\|gb\|ABF70110.1\| mitochondrial ATP synthase g subunit family protein [Musa balbisiana]	232.0	[0..1]	[121..1]
gi\|116060129 - gi\|116060129\|emb\|CAL56188.1\| unnamed protein product [Ostreococcus tauri]	65.0	[0..24]	[112..227]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKLVQLQS KACQASKFVA KHGNSYYKQL LEQNKQYIQE PATIEKCSEL SKQLLYTRLA  60
   61 SIPGRYETFR KEVDYAKNLL KNRANLKVED AGIAALFGLE CFAWFCAGEI VGRGFTFTGY 120
  121 YP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	47.522879
Match:	PF04718.6
Description:	No description for PF04718.6 was found.

Shown below is our most confident prediction for this domain.
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		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.809	N/A	N/A	a.7.6	Ribosomal protein S20

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits