YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: G2OX4_ARATH
Organism: Arabidopsis thaliana
Length: 321 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for G2OX4_ARATH.

Description E-value Query
Range
Subject
Range
ACCO_ACTCH - 1-aminocyclopropane-1-carboxylate oxidase - Actinidia chinensis (Kiwi) (Yangtao)
ACCO_ACTDE - 1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1
299.0 [0..13] [321..2]

Back

Predicted Domain #1
Region A:
Residues: [1-321]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKGSQKIVA VDQDIPIIDM SQERSQVSMQ IVKACESLGF FKVINHGVDQ TTISRMEQES  60
   61 INFFAKPAHE KKSVRPVNQP FRYGFRDIGL NGDSGEVEYL LFHTNDPAFR SQLSFSSAVN 120
  121 CYIEAVKQLA REILDLTAEG LHVPPHSFSR LISSVDSDSV LRVNHYPPSD QFFGEANLSD 180
  181 QSVSLTRVGF GEHTDPQILT VLRSNGVGGL QVSNSDGMWV SVSPDPSAFC VNVGDLLQVM 240
  241 TNGRFISVRH RALTYGEESR LSTAYFAGPP LQAKIGPLSA MVMTMNQPRL YQTFTWGEYK 300
  301 KRAYSLRLED SRLDMFRTCK D

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 78.39794
Match: 1w9yA
Description: The structure of ACC oxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.921320409505 bayes_pls_golite062009
binding 0.588242505102319 bayes_pls_golite062009
nucleic acid binding 0.0678642854814351 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle