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View Structure Prediction Details

Protein: MASY_ARATH
Organism: Arabidopsis thaliana
Length: 562 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MASY_ARATH.

Description E-value Query
Range
Subject
Range
MASY_SOYBN - Malate synthase, glyoxysomal (Fragment) OS=Glycine max PE=2 SV=1
685.0 [0..5] [562..7]

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Predicted Domain #1
Region A:
Residues: [1-562]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELETSVYRP NVAVYDSPDG VEVRGRYDQI FAKILTREAL SFVAELQREF RGHVKYAMEC  60
   61 RREARRRYNS GAVPGFDPST KFIRDGDWSC ASVPPAVADR RVEITGPVER KMIINALNSG 120
  121 AKVFMADFED ALSPSWENLM RGHVNLKDAV DGSITFHDKS RNRVYKLNDQ TAKLFVRPRG 180
  181 WHLPEAHILI DGEPATGCLV DFGLYFFHNY AKFRQTQGSG FGPFFYLPKM EHSREAKIWN 240
  241 SVFERAEKMA GIERGSIRAT VLIETLPAVF QMNEILYELR DHSVGLNCGR WDYIFSYVKT 300
  301 FQAHPDRLLP DRVLVGMGQH FMRSYSDLLI RTCHKRGVHA MGGMAAQIPI RDDPKANEMA 360
  361 LDLVRKDKLR EVRAGHDGTW AAHPGLIPIC MEAFTGHMGK SPNQIKSVKR EDAAAITEED 420
  421 LLQIPRGVRT LEGLRLNTRV GIQYLAAWLT GSGSVPLYNL MEDAATAEIS RVQNWQWIRY 480
  481 GVELDGDGLG VRVSKELFGR VVEEEMERIE KEVGKDKFKN GMYKEACKMF TKQCTAPELD 540
  541 DFLTLAVYNH IVAHYPINVS RL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 107.0
Match: 1d8cA
Description: Malate synthase G
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer 4.27762948199878 bayes_pls_golite062009
transferase activity, transferring acyl groups 2.61158006337608 bayes_pls_golite062009
catalytic activity 1.23634637968745 bayes_pls_golite062009
transferase activity 0.263512092168681 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle