YRC Public Data Repository - Protein Structure Prediction

Protein:	MT3_ARATH
Organism:	Arabidopsis thaliana
Length:	69 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MT3_ARATH.

Description	E-value	Query Range	Subject Range
gi\|20340253 - gi\|20340253\|gb\|AAM19713.1\|AF499726_1 metallothionein-like protein [Thellungiella halophila]	77.0	[0..1]	[69..1]
gi\|18958245 - gi\|18958245\|dbj\|BAB85601.1\| metallothionein type 3 [Brassica juncea]	72.0	[0..1]	[69..1]
MT3_MALDO - Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1	70.0	[0..1]	[66..1]
gi\|225461451, gi... - gi\|7406673\|emb\|CAB85630.1\| putative metallothionein-like protein [Vitis vinifera], gi\|225461453\|ref\|...	69.0	[0..3]	[66..2]
gi\|8698921 - gi\|8698921\|gb\|AAF78526.1\|AF195234_1 metallothionein-like protein [Pyrus pyrifolia]	69.0	[0..1]	[66..1]
gi\|3378489 - gi\|3378489\|emb\|CAA07565.1\| metallothionein-like protein [Ribes nigrum]	68.0	[0..3]	[66..2]
MT3_PRUAV - Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1	66.0	[0..1]	[66..1]
MT3_MUSAC - Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1 gi\|1213512\|gb\|AA... - metallothionein-like protein [Musa acuminata]	66.0	[0..3]	[66..2]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNCGSCDC ADKTQCVKKG TSYTFDIVET QESYKEAMIM DVGAEENNAN CKCKCGSSCS  60
   61 CVNCTCCPN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	4.619789
Match:	PF01439.9
Description:	No description for PF01439.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits