| Protein: | ERF38_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 194 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERF38_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
200.0 | [0..1] | [193..1] |
|
Region A: Residues: [1-109] |
1 11 21 31 41 51
| | | | | |
1 MERDDCRRFQ DSPAQTTERR VKYKPKKKRA KDDDDEKVVS KHPNFRGVRM RQWGKWVSEI 60
61 REPKKKSRIW LGTFSTAEMA ARAHDVAALA IKGGSAHLNF PELAYHLPR
|
| Detection Method: |  |
| Confidence: | 22.045757 |
| Match: | 2gccA |
| Description: | SOLUTION STRUCTURE OF THE GCC-BOX BINDING DOMAIN, NMR, MINIMIZED MEAN STRUCTURE |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.339357445627225 | bayes_pls_golite062009 |
|
Region A: Residues: [110-194] |
1 11 21 31 41 51
| | | | | |
1 PASADPKDIQ AAAAAAAAAV AIDMDVETSS PSPSPTVTET SSPAMIALSD DAFSDLPDLL 60
61 LNVNHNIDGF WDSFPYEEPF LSQSY
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.692 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.679 | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.614 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.496 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.482 | a.64.1 | Saposin |
