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View Structure Prediction Details

Protein: gi|21554875, gi|...
Organism: Arabidopsis thaliana
Length: 341 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21554875, gi|....

Description E-value Query
Range
Subject
Range
gi|79323071 - gi|79323071|ref|NP_001031418.1| 3'-5' exonuclease domain-containing protein / K homology domain-cont...
239.0 [0..1] [341..1]

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Predicted Domain #1
Region A:
Residues: [1-341]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSPTQLA HVPIPPEPGG RSPTQEANEP PVPIYIVTDP FQLPADFLNP SPEKKLVIGF  60
   61 DCEGVDLCRH GKLCIMQIAF SNAIYLVDVI EGGEVIMKAC KPALESNYIT KVIHDCKRDS 120
  121 EALYFQFGIR LHNVVDTQIA YSLIEEQEGR RRPLDDYISF VSLLADPRYC GISYEEKEEV 180
  181 RVLMRQDPKF WTYRPMTELM IRAAADDVRF LLYLYHKMMG KLNQRSLWHL AVRGALYCRC 240
  241 LCCMNDADFA DWPTVPPIPD NLKSEDQCLE EEILSVLDVP PGKMGRVIGR KGASILAIKE 300
  301 ACNAEILIGG AKGPPDKIFV IGPVREVRKA EAILRGRMID Y

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Detection Method: PSI-BLAST
Confidence: 57.0
Match: 1dpiA
Description: STRUCTURE OF LARGE FRAGMENT OF ESCHERICHIA COLI DNA POLYMERASE I COMPLEXED WITH D/TMP
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle