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View Structure Prediction Details

Protein: SUN1_ARATH
Organism: Arabidopsis thaliana
Length: 471 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SUN1_ARATH.

Description E-value Query
Range
Subject
Range
gi|76616953 - gi|76616953|ref|XP_875817.1| PREDICTED: similar to Sad1/unc-84-like protein 2 (Rab5-interacting prot...
315.0 [0..3] [453..696]

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Predicted Domain #1
Region A:
Residues: [1-305]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASTVSITA NTAAATRRTP ILAGEKKSNF DYPQSESLAN GGVGEAGGTS RDLSRGEATL  60
   61 DRSQGQDLGP VTRRSVSAAT GTNTTATQRR TRKVATPKSE KARWKTVVRI FAKQLGALLI 120
  121 IVGLIQLTRK MILKASSPSS PISSYETEMA FSGLESRIAE VDGLVKATTN SMQVQVELLD 180
  181 KKMEREAKVL RQEIERKASA FQSELKKIES RTESLEKSVD EVNAKPWVTK DELERIYEEL 240
  241 KKGNVDDSAF SEISIDELRA YARDIMEKEI EKHAADGLGR VDYALASGGA FVMEHSDPYL 300
  301 VGKGS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.39794
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [306-471]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SWFATTMRRA HTNAVKMLSP SFGEPGQCFP LKGSEGYVQI RLRGPIIPEA FTLEHVAKSV  60
   61 AYDRSSAPKD CRVSGSLQGP ESSAETENMQ LLTEFTYDLD RSNAQTFNIL ESSSSGLIDT 120
  121 VRLDFTSNHG SDSHTCIYRF RVHGRAPDPV PVVGTNLDQD SSPESE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.37
Match: 1tvgA
Description: X-ray structure of human PP25 gene product, HSPC034. Northeast Structural Genomics Target HR1958.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle