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View Structure Prediction Details

Protein: gi|11994288, gi|...
Organism: Arabidopsis thaliana
Length: 175 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11994288, gi|....

Description E-value Query
Range
Subject
Range
gi|52784100, gi|... - gi|52784100|ref|YP_089929.1| YnaD [Bacillus licheniformis ATCC 14580], gi|52346602|gb|AAU39236.1| Yn...
140.0 [0..2] [173..3]

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Predicted Domain #1
Region A:
Residues: [1-175]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIMESPRIFL RPFNLSDAED VFKWAGDDDV TRYLRWDSVN SLEEAKQHIL NKAIPHPWRR  60
   61 SISLLQDGHS IGYVSVKPDS GDGRCRADLA YAVAKEFWGR GIATAAVRMA VEQALEDFPE 120
  121 VVRLQAVVEV ENKASQRVLE KAGFRKEGLL EKYGFSKGVI RDMFLYSYVK DDCFV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.69897
Match: 1yr0A
Description: Crystal structure of phosphinothricin acetyltransferase from agrobacterium tumefaciens
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 2.34977492703662 bayes_pls_golite062009
transferase activity 1.85190002724385 bayes_pls_golite062009
transferase activity, transferring acyl groups 1.75772333794819 bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups 1.63399963366073 bayes_pls_golite062009
acyltransferase activity 1.60091210227059 bayes_pls_golite062009
N-acyltransferase activity 1.18143103040425 bayes_pls_golite062009
acetyltransferase activity 1.12147423121182 bayes_pls_golite062009
N-acetyltransferase activity 0.796917859235554 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle