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View Structure Prediction Details

Protein: gi|15219566, gi|...
Organism: Arabidopsis thaliana
Length: 991 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|15219566, gi|....

Predicted Domain #1
Region A:
Residues: [1-188]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNPTDESGR AVQLVYVDEN GKLKTDPEAI GALQKLKGPV AVVSLFGKAL QGKSFIWNQL  60
   61 LSRSIGFEVQ TLHRPCNGDI WMWIEPVKRI SEDGTEYSLV LLDVELEDAK SIPTLGLNDI 120
  121 ALDLSRLLEI RKQDHVGEAK DNTFFELGQF SPMFVQLMMD INSETVEGGE DVTQNSKLKK 180
  181 LRPLLLYG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.154902
Match: 2b8wA
Description: Crystal-structure of the N-terminal Large GTPase Domain of human Guanylate Binding protein 1 (hGBP1) in complex with GMP/AlF4
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [189-385]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDALMKFVSE RVRPKQRGDT IVTGPPLAGF TKAFSENVNN NIVPKISSLW QTVEELEGRR  60
   61 ARDTATEVYM SSLERSETPD ESMLLEAHNK AVVEALTAFC ESSIGNVEVK QKYKRDLWSF 120
  121 FAKALEDHKR VANVEAYSRC CNAIEDMGKK LWALPCSQDA NIGDMIKALD TAVAEYEASI 180
  181 NGPMKWQKLS SFLRESV

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 41.721246
Match: PF02841.6
Description: No description for PF02841.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [386-689]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QDILVHRRGN QMDELMSENS KLKLQQQSLE STMNLLKKQL EGREKMNKEY QKRYESAIDD  60
   61 ICKLSDQFKN RINDLESKCK SIHDEHSNLM EVLGSTRLEA SEWKRKYEGT LDENGVSNIR 120
  121 VGVDASITRC SNKLIDWKIK YENTVSEQKA VTEKIAAMEE KLKQASTTED GLRAEFSRVL 180
  181 DEKEKIITEK AAKLATLEQQ LASTRAELKK SALKVDECSS EAKDVRLQMS LLNEKYESVK 240
  241 SASELLETET ETLKREKDEL DKKCHIHLEE LEKLVLRLTN VESEALEAKK LVDSLKLEAE 300
  301 AARD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.522879
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [690-888]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NENKLQTSLV ERCIEIDRAK SRIEELEKVC TLNSGEGEAS ASKKLVDSMK MEAEASRKNE  60
   61 NKLQTLLEDK CIEIDRAKSR IEGLERDCLK LKYAESEAAT VKELVSSMKM EVESARSNEK 120
  121 KLQLSLQEKT IEIDRAKGQI EALERQKMEL SETLETRAKQ NEEEVTKWQR IINAEKSKNI 180
  181 RENLMEKEDS FMVWDEATP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.69897
Match: 2i1jA
Description: No description for 2i1jA was found.

Predicted Domain #5
Region A:
Residues: [889-991]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRVKRLKVE AAVTCSGSDF AQETEEDSVS QESRKVRTMT PRRCTSSEAG ATSSSTGTGH  60
   61 SKYTMKKLRT EILEHGFGAE LVGLKNPRKR DLVQLYERTV LRK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle