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View Structure Prediction Details

Protein: PUP12_ARATH
Organism: Arabidopsis thaliana
Length: 358 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUP12_ARATH.

Description E-value Query
Range
Subject
Range
gi|7321059, gi|7... - gi|7321059|emb|CAB82106.1| putative protein [Arabidopsis thaliana], gi|7267512|emb|CAB77995.1| putat...
159.0 [0..1] [358..1]

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Predicted Domain #1
Region A:
Residues: [1-84]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLLKEEDEG RRRTSVPTQL MKLNRSQWWI LVFISIFFLI SAQAISVLLG RFYYNEGGNS  60
   61 KWISTLVQTG GFPILYLPLS LLPA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [85-260]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQSSSSSSSS SSFKTLVWIY LSLGFAIGLD NFLYSVGLLY LSASTYSILC ASQLAFNGVF  60
   61 YYYINSQKIT CLIFFSVLFL SISAVLVSLD DDSNSPSGDS KWSYLIGCFC AVFASLIYSL 120
  121 QLSLMQFSFE KVLKSETLSM VLEMQIYTSL VASCVAVIGL FASGEWMLLS VEMEEF

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.09
Match: 2i68A
Description: No description for 2i68A was found.

Predicted Domain #3
Region A:
Residues: [261-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEGQVIYVLT LVGAAVSCQL GCVGAVSLIF LVSSLFSNLI STLSLIVTPL AAIAVFHDKL  60
   61 TEVKMVAMPI AFTGFTFYIY QNYLDDLKVQ RAREAQAE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle