YRC Public Data Repository - Protein Structure Prediction

Protein:	CCS_ARATH
Organism:	Arabidopsis thaliana
Length:	320 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCS_ARATH.

Description	E-value	Query Range	Subject Range
gi\|60830005 - gi\|60830005\|gb\|AAX36906.1\| copper chaperone for superoxide dismutase [synthetic construct]	168.0	[0..88]	[318..13]
gi\|21429608 - gi\|21429608\|gb\|AAM50090.1\| superoxide dismutase copper chaperone [Homo sapiens]	168.0	[0..88]	[318..13]
gi\|62950371 - gi\|62950371\|gb\|AAY22970.1\| copper/zinc superoxide dismutase chaperone [Arabidopsis thaliana]	168.0	[0..1]	[320..1]
CCS_PIG - Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS PE=2 SV=1	166.0	[0..90]	[318..15]
gi\|47212233 - gi\|47212233\|emb\|CAF96200.1\| unnamed protein product [Tetraodon nigroviridis]	164.0	[0..81]	[318..1]
COPA_STAHJ - Copper-exporting P-type ATPase A OS=Staphylococcus haemolyticus (strain JCSC1435) GN=copA PE=3 SV=1	163.0	[0..2]	[277..11]
gi\|228618776, gi... - gi\|229164696\|ref\|ZP_04292560.1\| Copper-exporting P-type ATPase A [Bacillus cereus R309803], gi\|22861... gi\|218848225, gi... - gi\|218848225\|ref\|YP_002455162.1\| copper-translocating P-type ATPase [Bacillus cereus AH820], gi\|2185... gi\|229125286, gi... - gi\|229125286\|ref\|ZP_04254387.1\| Copper-exporting P-type ATPase A [Bacillus cereus 95/8201], gi\|22865... gi\|229113482, gi... - gi\|229113482\|ref\|ZP_04242932.1\| Copper-exporting P-type ATPase A [Bacillus cereus Rock1-15], gi\|2286... gi\|116585146, gi... - gi\|190015465\|ref\|YP_001967097.1\| copper-translocating P-type ATPase [Bacillus cereus], gi\|190015200\|... gi\|42741587, gi\|... - gi\|44004521\|ref\|NP_982189.1\| copper-translocating P-type ATPase [Bacillus cereus ATCC 10987], gi\|427...	163.0	[0..2]	[285..11]
CCS_MOUSE - Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs PE=1 SV=1	162.0	[0..90]	[318..15]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASILRSVAT TSAVVAAASA IPIAIAFSSS SSSSSTNPKS QSLNFSFLSR SSPRLLGLSR  60
   61 SFVSSPMATA LTSDRNLHQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.045757
Match:	1p6tA
Description:	Structure characterization of the water soluble region of P-type ATPase CopA from Bacillus subtilis
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [80-320]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDRAMPQLLT EFMVDMTCEG CVNAVKNKLE TIEGIEKVEV DLSNQVVRIL GSSPVKAMTQ  60
   61 ALEQTGRKAR LIGQGVPQDF LVSAAVAEFK GPDIFGVVRF AQVSMELARI EANFTGLSPG 120
  121 THSWCINEYG DLTNGAASTG SLYNPFQDQT GTEPLGDLGT LEADKNGEAF YSGKKEKLKV 180
  181 ADLIGRAVVV YKTDDNKSGP GLTAAVIARS AGVGENYKKL CSCDGTVIWE ATNSDFVASK 240
  241 V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.221849
Match:	1jk9B
Description:	Copper chaperone for superoxide dismutase, C-terminal domain; Copper chaperone for superoxide dismutase, N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits