YRC Public Data Repository - Protein Structure Prediction

Protein:	RPOT2_ARATH
Organism:	Arabidopsis thaliana
Length:	1011 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPOT2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|2326363 - gi\|2326363\|emb\|CAA04491.1\| DNA-directed RNA polymerase [Arabidopsis thaliana]	1241.0	[0..1]	[1011..1]
gi\|30698494, gi\|... - gi\|37360973\|dbj\|BAC98395.1\| T7 bacteriophage-type single subunit RNA polymerase [Oryza sativa Japoni...	1146.0	[0..1]	[1011..1]
RPO2B_TOBAC - DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum GN=RPOT2-TOM PE=2 S...	1145.0	[0..1]	[1011..1]
RPOT2_NICSY - DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=...	1138.0	[0..1]	[1011..1]
gi\|62750823 - gi\|62750823\|emb\|CAC80138.1\| DNA-dependent RNA polymerase [Spinacia oleracea]	1128.0	[0..1]	[1011..1]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAQTPLFL ANQTKVFDHL IPLHKPFISS PNPVSQSFPM WRNIAKQAIS RSAARLNVSS  60
   61 QTRGLLVSSP ESIFSKNLSF RFPVL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [86-1011]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSPCHGKGFR CLSGITRREE FSKSERCLSG TLARGYTSVA EEEVLSTDVE EEPEVDELLK  60
   61 EMKKEKKRES HRSWRMKKQD QFGMGRTKFQ NLWRRQVKIE TEEWERAAAE YMELLTDMCE 120
  121 QKLAPNLPYV KSLFLGWFEP LRDAIAKDQE LYRLGKSKAT YAHYLDQLPA DKISVITMHK 180
  181 LMGHLMTGGD NGCVKVVHAA CTVGDAIEQE IRICTFLDKK KKGDDNEESG GVENETSMKE 240
  241 QDKLRKKVNE LIKKQKLSAV RKILQSHDYT KPWIADVRAK VGSRLIELLV RTAYIQSPAD 300
  301 QQDNDLPDVR PAFVHTFKVA KGSMNSGRKY GVIECDPLVR KGLEKSGRYA VMPYMPMLVP 360
  361 PLKWSGYDKG AYLFLTSYIM KTHGAKQQRE ALKSAPKGQL QPVFEALDTL GSTKWRVNKR 420
  421 VLTVVDRIWS SGGCVADMVD RSDVPLPEKP DTEDEGILKK WKWEVKSAKK VNSERHSQRC 480
  481 DTELKLSVAR KMKDEEAFYY PHNMDFRGRA YPMPPHLNHL GSDLCRGVLE FAEGRPMGIS 540
  541 GLRWLKIHLA NLYAGGVDKL SLDGRLAFTE NHLDDIFDSA DRPLEGSRWW LQAEDPFQCL 600
  601 AVCISLTEAL RSPSPETVLS HIPIHQDGSC NGLQHYAALG RDTLGAEAVN LVAGEKPADV 660
  661 YSGIATRVLD IMRRDADRDP EVFPEALRAR KLLNQVDRKL VKQTVMTSVY GVTYIGARDQ 720
  721 IKRRLKERSD FGDEKEVFGA ACYAAKVTLA AIDEMFQAAR AIMRWFGECA KIIASENETV 780
  781 RWTTPLGLPV VQPYHQMGTK LVKTSLQTLS LQHETDQVIV RRQRTAFPPN FIHSLDGSHM 840
  841 MMTAVACKRA GVCFAGVHDS FWTHACDVDK LNIILREKFV ELYSQPILEN LLESFEQSFP 900
  901 HLDFPPLPER GDLDLKVVLD SPYFFN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2pi4A
Description:	No description for 2pi4A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits