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View Structure Prediction Details

Protein: FH8_ARATH
Organism: Arabidopsis thaliana
Length: 760 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FH8_ARATH.

Description E-value Query
Range
Subject
Range
gi|15221680 - gi|15221680|ref|NP_173825.1| FH4 (FORMIN HOMOLOGUE 4); actin binding / protein binding [Arabidopsis ...
560.0 [0..1] [745..1]

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Predicted Domain #1
Region A:
Residues: [1-121]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAMFNHPWP NLTLIYFFFI VVLPFQSLSQ FDSPQNIETF FPISSLSPVP PPLLPPSSNP  60
   61 SPPSNNSSSS DKKTITKAVL ITAASTLLVA GVFFFCLQRC IIARRRRDRV GPVRVENTLP 120
  121 P

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [122-288]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPPPPMTSAA VTTTTLAREG FTRFGGVKGL ILDENGLDVL YWRKLQSQRE RSGSFRKQIV  60
   61 TGEEEDEKEV IYYKNKKKTE PVTEIPLLRG RSSTSHSVIH NEDHQPPPQV KQSEPTPPPP 120
  121 PPSIAVKQSA PTPSPPPPIK KGSSPSPPPP PPVKKVGALS SSASKPP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [289-760]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAPVRGASGG ETSKQVKLKP LHWDKVNPDS DHSMVWDKID RGSFSFDGDL MEALFGYVAV  60
   61 GKKSPEQGDE KNPKSTQIFI LDPRKSQNTA IVLKSLGMTR EELVESLIEG NDFVPDTLER 120
  121 LARIAPTKEE QSAILEFDGD TAKLADAETF LFHLLKSVPT AFTRLNAFLF RANYYPEMAH 180
  181 HSKCLQTLDL ACKELRSRGL FVKLLEAILK AGNRMNAGTA RGNAQAFNLT ALLKLSDVKS 240
  241 VDGKTSLLNF VVEEVVRSEG KRCVMNRRSH SLTRSGSSNY NGGNSSLQVM SKEEQEKEYL 300
  301 KLGLPVVGGL SSEFSNVKKA ACVDYETVVA TCSALAVRAK DAKTVIGECE DGEGGRFVKT 360
  361 MMTFLDSVEE EVKIAKGEER KVMELVKRTT DYYQAGAVTK GKNPLHLFVI VRDFLAMVDK 420
  421 VCLDIMRNMQ RRKVGSPISP SSQRNAVKFP VLPPNFMSDR AWSDSGGSDS DM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 111.0
Match: 2j1dG
Description: No description for 2j1dG was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle