YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PKSA_ARATH
Organism: Arabidopsis thaliana
Length: 395 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PKSA_ARATH.

Description E-value Query
Range
Subject
Range
CHS6_SOYBN - Chalcone synthase 6 OS=Glycine max GN=CHS6 PE=3 SV=1
391.0 [0..11] [392..1]

Back

Predicted Domain #1
Region A:
Residues: [1-395]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNSRMNGVE KLSSKSTRRV ANAGKATLLA LGKAFPSQVV PQENLVEGFL RDTKCDDAFI  60
   61 KEKLEHLCKT TTVKTRYTVL TREILAKYPE LTTEGSPTIK QRLEIANEAV VEMALEASLG 120
  121 CIKEWGRPVE DITHIVYVSS SEIRLPGGDL YLSAKLGLRN DVNRVMLYFL GCYGGVTGLR 180
  181 VAKDIAENNP GSRVLLTTSE TTILGFRPPN KARPYDLVGA ALFGDGAAAV IIGADPRECE 240
  241 APFMELHYAV QQFLPGTQNV IEGRLTEEGI NFKLGRDLPQ KIEENIEEFC KKLMGKAGDE 300
  301 SMEFNDMFWA VHPGGPAILN RLETKLKLEK EKLESSRRAL VDYGNVSSNT ILYVMEYMRD 360
  361 ELKKKGDAAQ EWGLGLAFGP GITFEGLLIR SLTSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 106.0
Match: 1bi5A
Description: Chalcone synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 2.14505178497871 bayes_pls_golite062009
transferase activity 1.45483382098717 bayes_pls_golite062009
transferase activity, transferring acyl groups 1.12155569250025 bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups 1.04684145062403 bayes_pls_golite062009
acyltransferase activity 0.932050235566705 bayes_pls_golite062009
naringenin-chalcone synthase activity 0.385839480590315 bayes_pls_golite062009
3-oxoacyl-[acyl-carrier-protein] synthase activity 0.130687514570417 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle