YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|18405143, gi\|...
Organism:	Arabidopsis thaliana
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18405143, gi|....

Description	E-value	Query Range	Subject Range
gi\|85116419 - gi\|85116419\|ref\|XP_965054.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28926855, gi\|... - gi\|32414627\|ref\|XP_327793.1\| hypothetical protein [Neurospora crassa], gi\|28926855\|gb\|EAA35818.1\| hy...	116.0	[0..4]	[76..2]
gi\|50943407, gi\|... - gi\|50943407\|ref\|XP_481231.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|37806067\|d...	114.0	[0..4]	[85..5]
gi\|46108756, gi\|... - gi\|46108756\|ref\|XP_381436.1\| hypothetical protein FG01260.1 [Gibberella zeae PH-1], gi\|42547726\|gb\|E...	111.0	[0..4]	[80..2]
gi\|109458504 - gi\|109458504\|ref\|XP_579917.2\| PREDICTED: similar to Feline leukemia virus subgroup C receptor-relate...	109.0	[0..4]	[82..1046]
gi\|44981682 - gi\|44981682\|gb\|AAS51432.1\| ACR206Cp [Ashbya gossypii ATCC 10895] gi\|45185892, gi\|... - gi\|45185892\|ref\|NP_983608.1\| ACR206Cp [Ashbya gossypii ATCC 10895], gi\|44981682\|gb\|AAS51432.1\| ACR20...	108.0	[0..4]	[80..3]
SDHF1_YEAST - Succinate dehydrogenase assembly factor 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 20... gi\|190404684 - gi\|190404684\|gb\|EDV07951.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YDR379C-A - Putative protein of unknown function; identified by homology with other fungi; GFP-fusion protein lo... SDHF1_YEAS7 - Succinate dehydrogenase assembly factor 1, mitochondrial OS=Saccharomyces cerevisiae (strain YJM789)...	107.0	[0..4]	[80..3]
SPAC664.12c - LYR family protein SDHF1_SCHPO - Succinate dehydrogenase assembly factor 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ...	106.0	[0..6]	[80..3]
gi\|49643199 - gi\|49643199\|emb\|CAG99151.1\| KLLA0E02619p [Kluyveromyces lactis] gi\|50308127, gi\|... - gi\|50308127\|ref\|XP_454064.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643199\|emb\|CAG9915...	105.0	[0..3]	[80..2]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGASKLSGMQ KQVLSLYRGF LRAARSRPIE DRKRIEMIVS TEFRHNSKEV DRKNFQYIEY  60
   61 LLRLGTKQLD QLKSPAIVSL SSIKVVTSKT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	17.958607
Match:	PF05347.6
Description:	No description for PF05347.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.978	N/A	N/A	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.970	N/A	N/A	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.970	N/A	N/A	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.962	N/A	N/A	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.902	N/A	N/A	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.902	N/A	N/A	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View	Download	0.901	N/A	N/A	a.64.1	Saposin
View	Download	0.887	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.842	N/A	N/A	a.24.17	Group V grass pollen allergen
View	Download	0.841	N/A	N/A	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits